View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_high_10 (Length: 458)
Name: NF16507_high_10
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 35908402 - 35908842
Alignment:
| Q |
1 |
ttcttttatcgaagtcttttattcccttttatgtggtgtaaacaattatgttctaacccctttcaacaaagnnnnnnnnnnnnncttactcttataaaat |
100 |
Q |
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| T |
35908402 |
ttcttttattgaagtcttttattcccttttatgtggtgtaaacaattatgttctaacccctttcaacaaagaaaaacaaaaaa-cttactctcataaaat |
35908500 |
T |
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| Q |
101 |
gtttcaattgctggaaaatcgagaagatttgcaaaaatagagatacaatgagtgacaaagaagaataaaaggtggaatcacaccattttcttggatttac |
200 |
Q |
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| T |
35908501 |
gtttcaattgctggaaaatcgagaagatttgcaaaaatagagatacaatgagtgacaaagaagaagaaaaggtggaatcacaccattttcttggatttac |
35908600 |
T |
|
| Q |
201 |
aatccgcaaggagagaaaggcaaagagataaatgttgtgcaaatatgagtcttataatactctttttacaacattctctcaaacacaaacttttttatta |
300 |
Q |
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| T |
35908601 |
aatccgcaaggagagaaagacaaagagataaatattgtgcaaatatgagtcttataatactctttttacaacattctctcaaacacaaacttttttatta |
35908700 |
T |
|
| Q |
301 |
gataaaatcaatgttgatcatacactttaaaaatggatttcacataaaattgtgtggctcattatcaacatcgatttctattagaggataatgttgatac |
400 |
Q |
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| T |
35908701 |
tataaaatcaatgttgatcatacactttaaaaatggatttcacataaaattgtatggctcattaccaacatcgatttctattagaggataatgttgatac |
35908800 |
T |
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| Q |
401 |
atcacctatacaccttccatcggctatagcaagtcataatga |
442 |
Q |
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| T |
35908801 |
atcacctacacaccttccatcggctatagcaagtcataatga |
35908842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 35910649 - 35910711
Alignment:
| Q |
379 |
tattagaggataatgttgatacatcacctatacaccttccatcggctatagcaagtcataatg |
441 |
Q |
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| T |
35910649 |
tattagaggataaagttgatacatcctctacacaccttccaccggctatagcaaatcataatg |
35910711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 27183398 - 27183459
Alignment:
| Q |
289 |
acttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaaat |
350 |
Q |
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| T |
27183398 |
acttttttattgggttaaatcaatgtggatcatacactttgaaaatggaattaacataaaat |
27183459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 27832940 - 27833001
Alignment:
| Q |
289 |
acttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaaat |
350 |
Q |
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| T |
27832940 |
acttttttattgggttaaatcaatgtggatcatacactttgaaaatggaattaacataaaat |
27833001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 4394412 - 4394469
Alignment:
| Q |
291 |
ttttttattagataaaatcaatgttgatcatacactttaaaaatggatttcacataaa |
348 |
Q |
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|||||||||| ||||||| ||||| |||| ||||||||||||||| |||||| ||||| |
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| T |
4394412 |
ttttttattaaataaaattaatgtagatcttacactttaaaaatgaatttcaaataaa |
4394469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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