View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_high_13 (Length: 384)
Name: NF16507_high_13
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 49392335 - 49391981
Alignment:
| Q |
11 |
cagagacaagagttgatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaagagaacgagtgtccattgaaagggtggtggtcgctgt |
110 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||| |
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| T |
49392335 |
cagacacaagagtttatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaagagaacgagtgttcgttgagagggtggtggtcgttgt |
49392236 |
T |
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| Q |
111 |
tgcgatggcggttgtaacgaggatggtgggggaaagaaaatacacgcagtaaagaaaggaggaagagacaggaagaagaggattgtcgtgcatttacaaa |
210 |
Q |
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| T |
49392235 |
tgcgatggcggttgtaacgaggacggtgggggaaagaaaacacacgcagtaaagaaaggaggaagagacaggaagaagaggattgtcgtgcatttacaaa |
49392136 |
T |
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| Q |
211 |
actacccccgctttaagggtgaaatatccaaattacccttggtgtatgtattgtgtcatgaaatttgtgcctatttatcatttcagttcttttttcccaa |
310 |
Q |
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| T |
49392135 |
actacccccgctttaagggtgaaatatccaaattacccttggtgtctgtattgtgtcatgaaatttgtgtctatttatcatttcagttcttttttcccaa |
49392036 |
T |
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| Q |
311 |
acccaaagctatcataaggatacttttcctagggctcttaatcttacatgcaaga |
365 |
Q |
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| T |
49392035 |
acccaaagctatcataaggatacttttcctagggctcttaatcttacatgcaaga |
49391981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 51312174 - 51312020
Alignment:
| Q |
140 |
gggaaagaaaatacacgcagtaaagaaaggaggaagagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatcc |
239 |
Q |
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| T |
51312174 |
gggaaagaaaacacacagagaagagagaggaagaagagagaagaaaaagatggttgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatcc |
51312075 |
T |
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| Q |
240 |
aaattacccttggtgtatgtattgtgtcatgaaa-tttgtgcctatttatcatttc |
294 |
Q |
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| T |
51312074 |
aaattacccatgctgtctttattgtgt-ttgaaagtttgtgtctacttatcatttc |
51312020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 31726579 - 31726296
Alignment:
| Q |
11 |
cagagacaagagttgatggtggtgacgggaagagtgtaacgatgacgaagaggaagggtagaagagaacgagtgtccattgaaagggtggtggtcgctgt |
110 |
Q |
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|||| ||||||||||||||||| |||| ||| | | |||||||||||||| | |||||||| ||||||||| |||| || ||||||||||||||||| |
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| T |
31726579 |
cagacacaagagttgatggtggcgacgagaacaatttaacgatgacgaagtcggagggtagaggagaacgagcgtccgccgagagggtggtggtcgctgt |
31726480 |
T |
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| Q |
111 |
tgcgatggcggttgtaacgaggatggtgggggaaagaaaatacacgcagtaaagaaaggaggaagagacaggaagaagaggattgtcgtgcatttacaaa |
210 |
Q |
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| T |
31726479 |
tgcgatggcggttataacgaggacggtgagggaaagaaaacaaacacagaaaagaaaggaggaagagacaggaagaagaggattgtggtgcatttacaac |
31726380 |
T |
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| Q |
211 |
actacccccgctttaagggtgaaatatccaaattacccttggtgtatgtattgtgtc-atgaaatttgtgcctatttatcattt |
293 |
Q |
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| T |
31726379 |
actgcccctgctttaagggtgaaatatccaaattatccttaatgtatgtattgtgtctaagaaatcagtgtctatttatcattt |
31726296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 22278715 - 22278605
Alignment:
| Q |
180 |
aggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaattacccttggtgtatgtattgtgtcatgaaatttgtg |
279 |
Q |
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|||||||||||| |||| ||| |||||||||||| || |||||||| |||||||||||||||||||| |||||| |||||||||||| ||| ||||| |
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| T |
22278715 |
aggaagaagagggttgtggtgtatttacaaaactgtccatgctttaagagtgaaatatccaaattacccatggtgtctgtattgtgtcaaaaaaattgtg |
22278616 |
T |
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| Q |
280 |
cctatttatca |
290 |
Q |
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|||||||||| |
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| T |
22278615 |
tctatttatca |
22278605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 22278854 - 22278805
Alignment:
| Q |
11 |
cagagacaagagttgatggtggtgacgggaagagtgtaacgatgacgaag |
60 |
Q |
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| T |
22278854 |
cagacacaagagttgatggtggcgacgggaagagtttggcgatgacgaag |
22278805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 22278793 - 22278748
Alignment:
| Q |
96 |
ggtggtggtcgctgttgcgatggcggttgtaacgaggatggtggggga |
143 |
Q |
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| T |
22278793 |
ggtggtggtcgctgttg--atagcggttgtaacgaggacggtggggga |
22278748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 47531832 - 47531744
Alignment:
| Q |
167 |
aggaggaagagacaggaagaagaggattgtcgtgcatttacaaaactacccccgctttaagggtgaaatatccaaattacccttggtgt |
255 |
Q |
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| T |
47531832 |
aggaagaagagagaagaagaagaggattgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatccaaattatccatggtgt |
47531744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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