View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16507_high_17 (Length: 326)
Name: NF16507_high_17
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 32330444 - 32330739
Alignment:
| Q |
15 |
atgatgtacatcaacaatgttgcgtattatgttttaatgaaactgaaactgcaagtcatttgttttgaaagttgtacnnnnnnnnn-gataatttgggat |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32330444 |
atgatgtacataaacaatgttgcgtattatgttttaatgaaattgaaaccgcaagtcatttgttttgaaagttgtacaaaagaaaaagataatttgggat |
32330543 |
T |
|
| Q |
114 |
tctattttcaaatggattaacacactcacttaggctagacatttgttaacactcacaccaattccttggccaattcagcttatgcagtattcaagtttct |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32330544 |
tctattttcaaattgattaacacactcacttaggctagacatt-gttaacactcacaccaattccttggccaattcagcttatgcagtattcaaatttct |
32330642 |
T |
|
| Q |
214 |
aatccaccttaactttcacttccttttgttattcaaccnnnnnnnnnnntacatgtatggtcggtcaaaatctagttaattggtaaaaactcatattt |
311 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32330643 |
aatccacctaaactttcacttccttttgttattcaacc-aaaaaaaaattacatgtatggtgggtcaaaatctagttaattggtaaaaactcatattt |
32330739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 4787209 - 4787146
Alignment:
| Q |
16 |
tgatgtacatcaacaatgttgcgtattatgttttaatgaaactgaaactgcaagtcatttgttt |
79 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
4787209 |
tgatgtgcatcaacaatgttgagtattttgttttaatgaaattgaaaccgcaagtcatttgttt |
4787146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 16159369 - 16159416
Alignment:
| Q |
16 |
tgatgtacatcaacaatgttgcgtattatgttttaatgaaactgaaac |
63 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
16159369 |
tgatgtgcatcaacaatgttgtgtattttgttttaatgaaattgaaac |
16159416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University