View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_high_2 (Length: 536)
Name: NF16507_high_2
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Original strand, 1599130 - 1599643
Alignment:
| Q |
18 |
tgtttatggttcatttcatgaggaaaatcaaattcaaatgttgcaacagttttataaaactgaactgaaccgttaaccgtttgctctgaaccgaattgat |
117 |
Q |
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| T |
1599130 |
tgtttatggttcgtttcatgaggaaaatcaaattgaaatgttgcaacagttttataaaactgaactgaaccgttaaccgtttgctctgaaccgaattgat |
1599229 |
T |
|
| Q |
118 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatc---ttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
214 |
Q |
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| T |
1599230 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatcatcttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
1599329 |
T |
|
| Q |
215 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttata--ttaatttgttctactctcacttgtggagtgaagt |
312 |
Q |
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| T |
1599330 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagt |
1599429 |
T |
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| Q |
313 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
412 |
Q |
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| T |
1599430 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaatattg |
1599529 |
T |
|
| Q |
413 |
ccgttttttaacaaaccatggtatatggaagttaaggaattctagacatgttttaaagctctaaa-----gtcccaatcagaatccctctaaaatgttat |
507 |
Q |
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| T |
1599530 |
ccgttttttaacaaaccatggtatatggaagttaaggaattttagacatgttttaaagctctaaagtcccgtcccaatcagaatccctctaaaatgttat |
1599629 |
T |
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| Q |
508 |
caaacccaccatct |
521 |
Q |
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| T |
1599630 |
caaacccacaatct |
1599643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 41222530 - 41222463
Alignment:
| Q |
23 |
atggttcatttcatgaggaaaatcaaattcaaatgttgcaacagttttataaaactgaactgaaccgt |
90 |
Q |
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| T |
41222530 |
atggttcgtttcaagaagaaaatcaaattgaactgtaacaacagtttcataaaactgaaccgaaccgt |
41222463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 41222434 - 41222373
Alignment:
| Q |
130 |
tgtaggttctgtggtttcaaatcgaataggaattatcttttccaaaaccgaactgtactttt |
191 |
Q |
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| T |
41222434 |
tgtaggttatgtggtttcaaaccgaataggaactatattttcaaaacccaaattgtactttt |
41222373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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