View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_high_20 (Length: 253)
Name: NF16507_high_20
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 800004 - 799804
Alignment:
| Q |
23 |
gacaagaagcctaaactctagaccttgttgagctccgtgtcatagattgaggcaagaatatatcaagaataaggtcaactctgtagaagtcaacgctgga |
122 |
Q |
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| T |
800004 |
gacaagaagcctaaactctagaccttgttgagctccgtgtcatagata-----aaga------caagaataaggtcaactctgtagaagtcaacgttgga |
799916 |
T |
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| Q |
123 |
gtacaagcctgtggatagagattctatctaccaacattcactcaaggattcgctaatgatgcatgcaacgactctatgcttagaaaggaaagtttattat |
222 |
Q |
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| T |
799915 |
gtacaagcctctggatagagattctatctaccaacattgactcaaggattcgctaaagatgcatgcaacgactctatgcttagaaaggaaagtttattat |
799816 |
T |
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| Q |
223 |
gacttaaaaaag |
234 |
Q |
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| T |
799815 |
gacttaagaaag |
799804 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 15649980 - 15649903
Alignment:
| Q |
151 |
taccaacattcactcaaggattcgctaatgatgcatgcaacgactctatgcttagaaaggaaagtttattatgactta |
228 |
Q |
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| T |
15649980 |
taccagcattgagtcaaagattcgttaatgatgcatccaacgactcttcacttagaaaggaaagtttattttgactta |
15649903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 29987404 - 29987493
Alignment:
| Q |
41 |
tagaccttgttgagctccgtgtcatagattgaggcaagaatat--atcaagaataaggtcaactctgtagaagtcaacgctggagtacaa |
128 |
Q |
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| T |
29987404 |
tagaccatgatgagctcagtgtcatagataaagacaagactttgcatcaagattaaggtcaactttgtagaagtcaacgatggactacaa |
29987493 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 12982566 - 12982615
Alignment:
| Q |
164 |
tcaaggattcgctaatgatgcatgcaacgactctatgcttagaaaggaaa |
213 |
Q |
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| T |
12982566 |
tcaagaattcgttaatgatgcatgcaatgactctttacttagaaaggaaa |
12982615 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 19882132 - 19882173
Alignment:
| Q |
179 |
tgatgcatgcaacgactctatgcttagaaaggaaagtttatt |
220 |
Q |
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| T |
19882132 |
tgatggatgcaacgactctttgcttagaaaggaaagattatt |
19882173 |
T |
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