View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_high_4 (Length: 508)
Name: NF16507_high_4
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 10584156 - 10584496
Alignment:
| Q |
12 |
atcatcactatgacttcatatcaaatgaacctgccctaaaaaggaacaagatacttcgacaaaaaccacatatgcctccaccataacaatacacaccatc |
111 |
Q |
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| T |
10584156 |
atcatcactatgacttcatatcaaatgaacctgccctaaaaaggaacaagatacttcgacaaaaaccacatatgcctccaccataacaatacacaccatc |
10584255 |
T |
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| Q |
112 |
aaagcaattaagtagttgcaaatttggtctataattgagcgatactatcaataatatctattgctatgtagtccctacattacagaaggaccctttgaat |
211 |
Q |
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| T |
10584256 |
aaagcaattaagtagttgcaaatttggtctataattgagcgatactatcaataatatctattgctacgtagtccctacattatagaaggaccctttgaat |
10584355 |
T |
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| Q |
212 |
taggtgcaacaatatcaataatctaaacgggaactatattacaaactcatgagtcattgttttgttcaatttgttgtatataaatgataattgatgatat |
311 |
Q |
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| T |
10584356 |
taggtgtaacaatattaataatctaagcggcaactatattacaaactcatgagtcattgttttgttcaatttgttgtatataaatgataattgatgatat |
10584455 |
T |
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| Q |
312 |
agtgtcaactccatttgctacaataaataagtattgatacc |
352 |
Q |
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| T |
10584456 |
agtctcaactccatttgctacaataaataagtattgatacc |
10584496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 373 - 508
Target Start/End: Original strand, 10584520 - 10584655
Alignment:
| Q |
373 |
ctcttgtaaacatattttaattaagtgtatgtttcttatcatagtgattcatcgtaatttcagcaaatttactatgatattataacatgcacaatatata |
472 |
Q |
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| T |
10584520 |
ctcttgtaaatatattttaattaagtgtatgtttcttatcatagtgattcatgataatttcagcaaatttactatgatattataacatgcacaatatata |
10584619 |
T |
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| Q |
473 |
taatgcaacaagtgtaccaaataattaggtaaaatt |
508 |
Q |
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| T |
10584620 |
taatgcaacaagtgtaccaaataattaggtaaaatt |
10584655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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