View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16507_high_7 (Length: 485)

Name: NF16507_high_7
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16507_high_7
NF16507_high_7
[»] chr3 (4 HSPs)
chr3 (31-468)||(798714-799146)
chr3 (19-115)||(25034956-25035052)
chr3 (22-114)||(44119095-44119187)
chr3 (137-369)||(25034697-25034929)
[»] chr4 (2 HSPs)
chr4 (21-101)||(10583607-10583687)
chr4 (172-311)||(10583387-10583527)
[»] chr7 (3 HSPs)
chr7 (21-115)||(7395304-7395398)
chr7 (32-110)||(19417758-19417836)
chr7 (56-111)||(29020804-29020859)
[»] chr1 (2 HSPs)
chr1 (21-115)||(20618151-20618244)
chr1 (267-360)||(12830986-12831079)
[»] chr6 (1 HSPs)
chr6 (278-413)||(24967968-24968105)
[»] chr2 (1 HSPs)
chr2 (53-107)||(15583166-15583220)
[»] scaffold0669 (1 HSPs)
scaffold0669 (57-108)||(4982-5034)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 31 - 468
Target Start/End: Original strand, 798714 - 799146
Alignment:
Q  31 cataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactcctannnnnnnnnnnn 130  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||                 
T  798714 cataactaacataagagacatcatagatgttggcgaagcatcaacaaacttgattccaagcttcctagccctccaatggtgactcctgctctctgtctct 798813  T
Q  131 nnnnnnattttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagt 230  Q
          |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||    
T  798814 ctctctattttggttcgattttaacaattgttaactttacagaaatgacatacaccttaatttatacaggtacataaatgttaacttctctaggaaaagt 798913  T
Q  231 aaggcccgcctagccaactgaagtttcttctgtcgaggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatct 330  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  798914 aaggcccgcctagccaactgaagtttcttctgttgaggaaaaacaagttgtcttcagatattttcttgaaccaccttagttcacctagaggaccaaatct 799013  T
Q  331 cgcctagcaaaccgactttggcttttccttcaagaactccgttttggctcccattcacctagctcagctcgccaagtgaatcaggcttttcaccagatgt 430  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||     ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  799014 cgcctagcaaaccgactttggcttttccttcgaggactccgttttggc-----ttcacctagctcagctcgccaagcgaatcaagcttttcaccagatgt 799108  T
Q  431 ctcatatgatccgccctaacttctagcgcatgtgcttg 468  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  799109 ctcatatgatctgccctaacttctagcgcatgtgcttg 799146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 25035052 - 25034956
Alignment:
Q  19 atccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 115  Q
    |||||| | |||||||||||||||| ||||  | ||||||||||||||||||||||||| ||||||||||| ||||||   ||||||||||||||||    
T  25035052 atccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaatggtgactc 25034956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 44119187 - 44119095
Alignment:
Q  22 catgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgact 114  Q
    |||| |||| |||||||||||||||||  | ||||||||| | ||||| ||||||| ||||||| |||||||||| |||||||||||||||||    
T  44119187 catgctatgaataactaacataagagagttgatagatgtttgtgaagcgtcaacaagcttgatttcaagcttcctagccctccaatggtgact 44119095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 137 - 369
Target Start/End: Complemental strand, 25034929 - 25034697
Alignment:
Q  137 attttggttcgattttaacaatggttaactttacagaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcc 236  Q
    ||||||||||| ||||| |||||| ||| | ||| ||| |||| ||||||| |||||||| ||||  | ||||||||| |||  || || ||||||||      
T  25034929 attttggttcggtttta-caatggctaattctactgaattgacctacacctctatttatagaggtcttgaaatgttaagttcgttaggagaagtaaggat 25034831  T
Q  237 cgcctagccaactgaagtttcttctgtcg-aggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcct 335  Q
    | | |||| ||  || ||||| ||| | | ||||||||  |||||| |||  |||||| | | |||||||||||||| | |||  ||||| ||||||| |    
T  25034830 cacttagcgaatcgaggtttcatctttgggaggaaaaatcagttgtgttcggatattttcataaaccaccttagttcgcttagcagaccacatctcgctt 25034731  T
Q  336 agcaaaccgactttggcttttccttcaagaactc 369  Q
    | ||||||  |||||||||||||||| |||||||    
T  25034730 atcaaaccacctttggcttttccttctagaactc 25034697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 10583687 - 10583607
Alignment:
Q  21 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccc 101  Q
    |||||||||||||||||||||||||| |  | |||||| |||||||||||||| ||| |||||||||||||||||| ||||    
T  10583687 ccatgatatgcataactaacataagatagttgatagatattggagaagcatcaccaagcttgattccaagcttcctagccc 10583607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 10583527 - 10583387
Alignment:
Q  172 gaaatgacatacacctttatttatacaggttcttaaatgttaacttctctaagaaaagtaaggcccgcctagccaactgaagtttcttctgtcga-ggaa 270  Q
    |||||||| |||||||||||||||| ||||| | ||||||||| ||| ||| | ||| ||||||   |||||| ||  || ||||||||| | || ||||    
T  10583527 gaaatgacgtacacctttatttatagaggttttgaaatgttaagttcactatgcaaaataaggctttcctagcaaatcgaggtttcttctttggagggaa 10583428  T
Q  271 aaacaagttgtcttcaaatatttccttgaaccaccttagtt 311  Q
    |||| |||||||||   |||||| || ||||||| ||||||    
T  10583427 aaaccagttgtcttatgatattttctggaaccacgttagtt 10583387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 7395304 - 7395398
Alignment:
Q  21 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 115  Q
    |||||||||  | ||| |||||||||||  | |||| |||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||    
T  7395304 ccatgatatatagaacgaacataagagagttgatagctgttggagaagcatcaacaagcttgattccaagattcctagcccttcaatggtgactc 7395398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 19417758 - 19417836
Alignment:
Q  32 ataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggt 110  Q
    |||||||| ||||||||  | |||||||||||||| |||||||||| ||||| |||||||||  | ||||| |||||||    
T  19417758 ataactaatataagagagttgatagatgttggagatgcatcaacaagcttgaatccaagcttattagcccttcaatggt 19417836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 29020804 - 29020859
Alignment:
Q  56 gatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtg 111  Q
    |||||| ||||||||| ||||| ||||  |||||||||||| ||||||||||||||    
T  29020804 gatgtttgagaagcatgaacaagcttgtctccaagcttcctagccctccaatggtg 29020859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 20618151 - 20618244
Alignment:
Q  21 ccatgatatgcataactaacataagagacatcatagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaatggtgactc 115  Q
    |||||||||||||||||||||| |||||  | |||||||||||||||||||   |||  |||||||||| |||||| ||||| ||||| ||||||    
T  20618151 ccatgatatgcataactaacat-agagagttgatagatgttggagaagcattgccaatattgattccaatcttcctagcccttcaatgatgactc 20618244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 360
Target Start/End: Original strand, 12830986 - 12831079
Alignment:
Q  267 ggaaaaacaagttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttcctt 360  Q
    |||||||| ||||| ||||| |||||| ||||||||   ||||||| | ||  ||||||||||||||||||| ||  | || ||||||||||||    
T  12830986 ggaaaaaccagttgacttcagatattttcttgaaccgatttagttctcttaacggaccaaatctcgcctagcgaaatgtctctggcttttcctt 12831079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 413
Target Start/End: Original strand, 24967968 - 24968105
Alignment:
Q  278 ttgtcttcaaatatttccttgaaccaccttagttcacctagaggaccaaatctcgcctagcaaaccgactttggcttttccttcaagaa--ctccgtttt 375  Q
    ||||||||| |||||| |||||||| | ||||||| | |||| || ||||||| | ||| | || || ||||||||||| |||| | ||  |||  ||||    
T  24967968 ttgtcttcatatattttcttgaaccgcattagttcgcttagaagatcaaatctagtctaacgaaacgcctttggctttttcttctaaaactctctatttt 24968067  T
Q  376 ggctcccattcacctagctcagctcgccaagtgaatca 413  Q
    |||||  |||||||| |||||||||||| || ||||||    
T  24968068 ggctcttattcacctcgctcagctcgcctagcgaatca 24968105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 15583166 - 15583220
Alignment:
Q  53 atagatgttggagaagcatcaacaaacttgattccaagcttccttgccctccaat 107  Q
    |||||||||||| ||||||||||||  | || |||||||||||| ||||||||||    
T  15583166 atagatgttggataagcatcaacaagttggaatccaagcttcctagccctccaat 15583220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 4982 - 5034
Alignment:
Q  57 atgttggagaagcatcaacaaacttgattccaagc-ttccttgccctccaatg 108  Q
    ||||||||||||||||||||| ||||  ||||||| ||||| |||||||||||    
T  4982 atgttggagaagcatcaacaagcttgtctccaagctttcctagccctccaatg 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University