View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16507_low_1 (Length: 977)

Name: NF16507_low_1
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16507_low_1
NF16507_low_1
[»] chr6 (1 HSPs)
chr6 (19-658)||(21144596-21145236)


Alignment Details
Target: chr6 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 21145236 - 21144596
Alignment:
Q  19 cactccccattaaccttcaagg-tcttaaacaatttccacctcgtcttgccttcatacaattatggaaaaagttggtgttagaatccccttttttaagcc 117  Q
    |||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21145236 cactccccattaaccttcaaagctcttaaacaatttccacttcatcttgccttcatacaattatggaaaaagttggtgttagaatccccttctttaagcc 21145137  T
Q  118 acttgatacgagatctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaattttttcttttcagactcggacatcttcatcact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |    
T  21145136 acttgatacgagatctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaaaattttcttttcggactcggacatcttcatcatt 21145037  T
Q  218 caacaacgacaactctccccttaaatccacctcttgtacatcttcttttaacctagaaattctctcttacatcgaaccatgctcctccttgttccactct 317  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21145036 caacaacgacaactctccccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactcctccttgttccactct 21144937  T
Q  318 ctaagccttcctttaaccccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttga 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21144936 ctaagccttcctttaaccccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttga 21144837  T
Q  418 tttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaactcaccaaat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21144836 tttgcctattatccaaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaactcaccaaat 21144737  T
Q  518 tggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggattttaatccaaacagttattttgctggccactaagcttggat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21144736 tggtctccaatctgcttgaaagcctcttcatcccagacatgaactggtaaacttaggattttaatccaaacagttcttttgctggccactaagcttggat 21144637  T
Q  618 tccattccttcatctccctaaaatgagaatcccaccaaaat 658  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21144636 tccattccttcatctccctaaaatgagaatcccaccaaaat 21144596  T

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