View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_11 (Length: 483)
Name: NF16507_low_11
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 216 - 473
Target Start/End: Original strand, 20204638 - 20204895
Alignment:
| Q |
216 |
gcactgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggc |
315 |
Q |
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| T |
20204638 |
gcactgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggc |
20204737 |
T |
|
| Q |
316 |
gtgtttgtgtcagtgttttatactattagttatctctttagcaccgatacatctgatcgaagacatgtccggtgtctaactctcacatgtgtgatcacat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
20204738 |
gtgtttgtgtcagtgttttatactattagttatctctttagcaccgatacttctgatcgaagacatgtccggtgtgtgactctcacatgtgtgatcacat |
20204837 |
T |
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| Q |
416 |
acaattatgttattctctcaaattaccaccggtgttgatgttgtaattatcatctgtg |
473 |
Q |
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| T |
20204838 |
acaattatgttattttctcaaattacaaccggtgtcggtgttgtaactatcatctgtg |
20204895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 20204499 - 20204607
Alignment:
| Q |
87 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat |
186 |
Q |
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| T |
20204499 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgaaggatacattcacatttctcaggttagaatttatttatgttat |
20204598 |
T |
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| Q |
187 |
ttccatact |
195 |
Q |
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||||||||| |
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| T |
20204599 |
ttccatact |
20204607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 20199640 - 20199744
Alignment:
| Q |
87 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat |
186 |
Q |
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||||||||||||||||| ||||||||| || ||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
20199640 |
aggtgttgaggttaaggctggacaatcggttaaagttgatccaaatgatcaatgtacgggatacattcacatttctcaagtaagaatttgtttatgttat |
20199739 |
T |
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| Q |
187 |
ttcca |
191 |
Q |
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||||| |
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| T |
20199740 |
ttcca |
20199744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 15086770 - 15086722
Alignment:
| Q |
239 |
tgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattca |
288 |
Q |
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| T |
15086770 |
tgtgtccggtgtccgacacca-acacatgtgattacgttcaaataattca |
15086722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 585728 - 585759
Alignment:
| Q |
261 |
acacatgtgattacgttcaattaattcatttt |
292 |
Q |
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| T |
585728 |
acacatgtgattacgttcaattaattcatttt |
585759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 292
Target Start/End: Original strand, 18268013 - 18268044
Alignment:
| Q |
261 |
acacatgtgattacgttcaattaattcatttt |
292 |
Q |
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| T |
18268013 |
acacatgtgattacgttcaattaattcatttt |
18268044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 14782856 - 14782885
Alignment:
| Q |
263 |
acatgtgattacgttcaattaattcatttt |
292 |
Q |
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| T |
14782856 |
acatgtgattacgttcaattaattcatttt |
14782885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 13810568 - 13810517
Alignment:
| Q |
240 |
gtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcatttt |
292 |
Q |
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| T |
13810568 |
gtgtccggtgtctgacaccg-acacatgtgattacgttcaataaattcatttt |
13810517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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