View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16507_low_12 (Length: 473)
Name: NF16507_low_12
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 38025007 - 38025468
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025007 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
38025106 |
T |
|
| Q |
101 |
ttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgcgatggaggataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025107 |
ttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgcgatggaggataat |
38025206 |
T |
|
| Q |
201 |
gtatttatagatttcaagagtttctttgaaatccagttgttagaaaatagctgttaaaatgatggggcctatgagaagagatcacatggtattgtcttag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38025207 |
gtatttatagatttcaagagtttctttgaaatccagttgttagaaaatagctgttaaaatgatggggcctatgagacgagatcacatggtattgtcttag |
38025306 |
T |
|
| Q |
301 |
atgcctctatcaaggatcaataagagtgcaaactggtaccactcaaaatctaatgagatatgcttatcatgttttactcaatgccaactcatttcttttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025307 |
atgcctctatcaaggatcaataagagtgcaaactggtaccactcaaaatctaatgagatatgcttatcatgttttactcaatgccaactcatttcttttt |
38025406 |
T |
|
| Q |
401 |
agacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38025407 |
agacaagcatcaaacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
38025468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 38031459 - 38031755
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38031459 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaatggaaacccat |
38031558 |
T |
|
| Q |
101 |
ttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgcgatggaggataat |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| | | |
|
|
| T |
38031559 |
ttcaaatgttttgatgaaaaaactgaatttctctgatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgtgaagaaggacagt |
38031658 |
T |
|
| Q |
201 |
gtatttatagatttcaagagtttctttgaaatccagttgttagaaaatagctgttaaaatgatggggcctatgag--aagagatcacatggtattgtct |
297 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| || |||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
38031659 |
gtatttatagatttca--agtatctttgaaattcatttgttagaaaatgattgttaaaatgatggggcccatgagacaagagatcacatggtattgtct |
38031755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 50912001 - 50912186
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
100 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50912001 |
catataccgcaagatagccctttggcacattcacaacttttgatgatgcttggctacctgtaaatgaagttcgtctaatggcaggtaaacggaaacccat |
50912100 |
T |
|
| Q |
101 |
ttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttg |
186 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
50912101 |
ttcaaatattttgaagaaaaaactgaatttctcagatttcagcaaaatctttctatatttgtttgctcgagtgatttgtgaagttg |
50912186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 6 - 462
Target Start/End: Original strand, 38028903 - 38029382
Alignment:
| Q |
6 |
actgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaata---gcaggtaaacggaaacccattt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
38028903 |
actgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccattt |
38028999 |
T |
|
| Q |
103 |
caaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgcgatggaggataatg |
201 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| || ||| | || ||| |||||||| |||||||||| |||| || |||||| | || |
|
|
| T |
38029000 |
caaatgttttgaagaacaagatgaatttctcagatataagataagtgtataaaagattgattgcttgagtgatttgtgattgttgtgaaggaggacactg |
38029099 |
T |
|
| Q |
202 |
tatttatagatttcaagagtttctttgaaatccagttgttagaaaatag-ctgttaaaatgatggggcctatgag--aagagatcacatggtattgtctt |
298 |
Q |
| |
|
||||||||| || ||||||||| |||||||||| ||| ||| ||| | |||||||| || ||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
38029100 |
tatttatagtttccaagagttt-tttgaaatccctttgctagggaattgattgttaaaagaatagggcccatgagacaagagatcacatgggattgtctt |
38029198 |
T |
|
| Q |
299 |
agatgcctctatcaagga---------tcaataagagtgcaaactggtaccactcaaaatctaatgagatatgcttatcatgttttact----------- |
378 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||| |||| |
|
|
| T |
38029199 |
agatgcctctatcaaggatcaataagttcaataagagtgcaaactgtaaccactcaaaatctaaagagatatacttatcttgttatactcaatgcttgta |
38029298 |
T |
|
| Q |
379 |
caatgccaactcatttctttttagacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
38029299 |
caatgccaactcatttcttcttagacatgcatcagacatggcacatgttctctttacatcgataacacaactttatgttgatga |
38029382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 55084794 - 55084467
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagc---aggtaaacggaaacc |
97 |
Q |
| |
|
|||| ||||||||| | || ||||| |||||||||| ||||||||||| |||||||| ||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
55084794 |
catacactgcaagacacccttttggcacattcacagattttgatgatgtttggctacccgtaaatgaagtccttctaatagctgcaggtaaacggaaacc |
55084695 |
T |
|
| Q |
98 |
catttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgcgatggaggat |
197 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||||||||||| || ||||||||||||||| ||| | ||||||||||||| || ||||| |
|
|
| T |
55084694 |
-atttcaaatgttttgaataacaagctgaatttatcagatttaagaaaaaggtatctaaatttgtttgcctgagtaatttgtgaagttgtgaaagaggac |
55084596 |
T |
|
| Q |
198 |
aatgtatttatagatttcaagagtttctttgaaatccagttgttaga-aaatagctgttaaaatgatggggcctatgag--aagagatcacatggtattg |
294 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || ||| | || |||| |||||||| |||||||||| ||||| ||||||| ||||||| ||| |
|
|
| T |
55084595 |
aatgtatttatagttttcaagagttt-attgaaattcatttgcttgagaaatgactgttaaattgatggggccaatgagacaagagatgacatggtgttg |
55084497 |
T |
|
| Q |
295 |
tcttagatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |
|
|
| T |
55084496 |
tcttagatgcctctatcaagaatcaataag |
55084467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 38036930 - 38037252
Alignment:
| Q |
6 |
actgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagc---aggtaaacggaaacccattt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| |||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
38036930 |
actgcaagatagccctttggcacattcaatactttggatgtt---tggctactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccattt |
38037026 |
T |
|
| Q |
103 |
caaatgtttt-gaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaa-gttgcgatggaggataat |
200 |
Q |
| |
|
|| | |||| |||||| || ||||||||||| || ||||| |||||| | ||| ||||||||||||| |||||||||| |||| || |||||| | | |
|
|
| T |
38037027 |
cagttttttttgaagaacaagatgaatttctcaaatgtaagataaatgtatataagtttgtttgcttgagtgatttgtgattgttgtgaaggaggacatt |
38037126 |
T |
|
| Q |
201 |
gtatttatagatttcaagagtttctttgaaatccagttgttaga-aaatagctgttaaaatgatggggcctatgaga--agagatcacatggtattgtct |
297 |
Q |
| |
|
||||||||| || ||||||||| |||||||||| ||| |||| |||| |||||||| || |||||| |||||| |||||||||||||| |||||| |
|
|
| T |
38037127 |
atatttatagtttccaagagttt-tttgaaatccctttgctagagaaatgattgttaaaaggacggggcccatgagatgagagatcacatggtgttgtct |
38037225 |
T |
|
| Q |
298 |
tagatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
38037226 |
tagatgcctctattaaggatcaataag |
38037252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 38040218 - 38040539
Alignment:
| Q |
6 |
actgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaata---gcaggtaaacggaaacccattt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||| ||||||||| | ||||||| ||||||||| |||| |||||| |||||||||| |
|
|
| T |
38040218 |
actgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccattt |
38040314 |
T |
|
| Q |
103 |
caaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgcgatggaggataatg |
201 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||| ||||| |||||| | ||| |||| ||| |||| |||||||||| |||| || |||||| | | |
|
|
| T |
38040315 |
caaatgttttgatgaacaagatgaatttctcagatgtaagataaatgtatataagtttgattgtttgagtgatttgtgattgttgtgaaggaggacacta |
38040414 |
T |
|
| Q |
202 |
tatttatagatttcaagagtttctttgaaatccagttgttaga-aaatagctgttaaaatgatggggcctatgaga--agagatcacatggtattgtctt |
298 |
Q |
| |
|
||||||||| || |||||||||| ||||||||| ||| |||| ||||| |||||||| || |||||| |||||| |||||||||||||| ||||||| |
|
|
| T |
38040415 |
tatttatagtttacaagagtttc-ttgaaatccctttgctagagaaataattgttaaaaggacggggcccatgagatgagagatcacatggtgttgtctt |
38040513 |
T |
|
| Q |
299 |
agatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
38040514 |
ggatgccagtattaaggatcaataag |
38040539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 50909968 - 50909641
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaata---gcaggtaaacggaaacc |
97 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||| |||| ||||| ||||||||| ||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
50909968 |
catacactgcaagataaccctttggcacattcaatacttt---tgatgtttggctactgctaaatgaagctcgtctaatagctgctggtaaacggaaacc |
50909872 |
T |
|
| Q |
98 |
catttcaaatgttttgaagaaa-aaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgcgatggagg |
195 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| ||||| ||| || || || |||| |||||||| |||||||||| |||| || |||| |
|
|
| T |
50909871 |
catttcaaatgttttgaagaaataagatgaatttctcagatgtaagataaaagtatccaagtttgattgcttgagtgatttgtgagtgttgtgaatgagg |
50909772 |
T |
|
| Q |
196 |
ataatgtatttatagatttcaagagtttctttgaaatccagttgttaga-aaatagctgttaaaatgatggggcctatgaga--agagatcacatggtat |
292 |
Q |
| |
|
| | ||||||||| || ||||||||| ||||||||| |||||||| |||| || ||||| ||||||| | |||||| ||| ||||||||| | |
|
|
| T |
50909771 |
acacaatatttatagtttctaagagtttc-ttgaaatccctttgttagagaaatgattgctaaaaggatgggggccatgagatgagatatcacatggggt |
50909673 |
T |
|
| Q |
293 |
tgtcttagatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
||||||||||||| |||| |||||||| |||| |
|
|
| T |
50909672 |
tgtcttagatgccactattaaggatcagtaag |
50909641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 6 - 324
Target Start/End: Original strand, 38033916 - 38034238
Alignment:
| Q |
6 |
actgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagc---aggtaaacggaaacccattt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||| | || ||||| | ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
38033916 |
actgcaagatagccctttggcacattcaatgcttttgatgtt---tgactactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccattt |
38034012 |
T |
|
| Q |
103 |
caa-atgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgcgatggaggataat |
200 |
Q |
| |
|
||| | |||||||||| || ||||||||||||| ||||| || ||| | ||| |||| |||||||| |||||||||| |||| || |||||| | |
|
|
| T |
38034013 |
caattttttttgaagaacaagacgaatttctcagatgtaagataagtgtatataagtttgattgcttgagtgatttgtgattgttgtgaaggaggaccct |
38034112 |
T |
|
| Q |
201 |
gtatttatagatttcaagagtttctttgaaatccagttgttaga-aaatagctgttaaaatgatggggcctatgaga--agagatcacatggtattgtct |
297 |
Q |
| |
|
||||||||| || ||||||||| ||||||||| ||| |||| |||| ||||| || | |||||| |||||| |||||||||||||| |||||| |
|
|
| T |
38034113 |
atatttatagtttccaagagttt-gttgaaatccctttgctagagaaatgattgttataaggccggggcccatgagatgagagatcacatggtgttgtct |
38034211 |
T |
|
| Q |
298 |
tagatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
|||||||| |||| ||||||||||||| |
|
|
| T |
38034212 |
tagatgccactattaaggatcaataag |
38034238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 38037325 - 38037398
Alignment:
| Q |
389 |
tcatttctttttagacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
||||||| ||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38037325 |
tcatttcatttcagacaggcatcagacacggcacatgttctcttcatattgataacacaacttaatgttgatga |
38037398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 462
Target Start/End: Original strand, 38034318 - 38034379
Alignment:
| Q |
401 |
agacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38034318 |
agacaggcatcagacacggcacatgttctcttcacattgataacgcaacttaatgttgatga |
38034379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 433
Target Start/End: Original strand, 50912317 - 50912372
Alignment:
| Q |
378 |
tcaatgccaactcatttctttttagacaagcatccgacatggcacatgttctcttc |
433 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
50912317 |
tcaatgcctactcatttcttttcacacaagcatcagacatggcacatgttctcttc |
50912372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 50912223 - 50912269
Alignment:
| Q |
278 |
gagatcacatggtattgtcttagatgcctctatcaaggatcaataag |
324 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
50912223 |
gagatcacatggtattgtctttgatgcctctgtcaaggatcaataag |
50912269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 50909575 - 50909495
Alignment:
| Q |
382 |
tgccaactcatttctttttagacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
|||| ||||||||| ||| || || ||||| ||||||||||||||| ||||||||||||| ||||| || |||| |||||| |
|
|
| T |
50909575 |
tgcctactcatttcatttgaggcatgcatcagacatggcacatgttatcttcacattgatgacacagctcaatgctgatga |
50909495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 38040625 - 38040670
Alignment:
| Q |
407 |
gcatccgacatggcacatgttctcttcacattgataacacaactta |
452 |
Q |
| |
|
||||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
38040625 |
gcatcagacatggaacatgttctgttcacattgataacacaactta |
38040670 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 55084372 - 55084327
Alignment:
| Q |
413 |
gacatggcacatgttctcttcacattgataacacaacttaatgttg |
458 |
Q |
| |
|
||||||||||||||| |||||| |||||||| ||||||| |||||| |
|
|
| T |
55084372 |
gacatggcacatgttttcttcatattgataaaacaactttatgttg |
55084327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 38035003 - 38034963
Alignment:
| Q |
61 |
taaatgaagttcgtctaatagcaggtaaacggaaacccatt |
101 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
38035003 |
taaatgatgatcgtctaatagcaggtaaacgaaaacccatt |
38034963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 21607428 - 21607725
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21607428 |
catataccgcaagatatccctttggtacattcacaacttttgatgatgcttggctacttgtaaatgaagttcgtctaatagcaggtaaacggaaacccat |
21607527 |
T |
|
| Q |
101 |
ttcaaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgcgatggaggataat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| | | |
|
|
| T |
21607528 |
ttcaaatgttttgaagaaaaaactgaatttctctgatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtgaagttgtgaaggaggacagt |
21607627 |
T |
|
| Q |
201 |
gtatttatagatttcaagagtttctttgaaatccagttgttagaaaatagctgttaaaatgatggggcctatgag--aagagatcacatggtattgtct |
297 |
Q |
| |
|
|||||||||||||||||| | | |||||||| || |||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
21607628 |
gtatttatagatttcaagtatct-tttgaaattcatttgttagaaaatgattgttaaaatgatggggaccatgagacaagagatcacatggtattgtct |
21607725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 6 - 462
Target Start/End: Original strand, 21604891 - 21605373
Alignment:
| Q |
6 |
actgcaagatagccctttggtacattcacagcttttgatgatgcttggctacttgtaaatgaagttcgtctaata---gcaggtaaacggaaacccattt |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||| ||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
21604891 |
actgcaagatagccctttggcacattcaatacttt---tgatgtttggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccattt |
21604987 |
T |
|
| Q |
103 |
caaatgttttgaagaaaaaactgaatttctcagatttaagaaaaatgtttctaaatttgtttgcttgaatgatttgtga-agttgcga---tggaggata |
198 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||| | || | | |||||||| |||||||||| |||| || |||||| | |
|
|
| T |
21604988 |
caaatgttttgaagaacaagatgaatttctcagatataagataaatgtataaaagatcgattgcttgagtgatttgtgattgttgtgaaggaggaggaca |
21605087 |
T |
|
| Q |
199 |
atgtatttatagatttcaagagtttctttgaaatccagttgtta-gaaaatagctgttaaaatgatggggcctatgag--aagagatcacatggtattgt |
295 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||| ||| || | |||| |||||||| || ||||||||||| |||||||||||||| ||||| |
|
|
| T |
21605088 |
ctgtatttatagtttccaagagttt-tttgaaatccctttgctagggaaatgattgttaaaagaatagggcctatgagacaagagatcacatgggattgt |
21605186 |
T |
|
| Q |
296 |
cttagatgcctctatcaagga---------tcaataagagtgcaaactggtaccactcaaaatctaatgagatatgcttatcatgttttact-------- |
378 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||||| |||| |||| |
|
|
| T |
21605187 |
cttagatgcctctatcaaggatcaataagttcaataagagtgcaaactgtaaccactcaaaatctaaagagatatacttatcttgttatactcaatgctt |
21605286 |
T |
|
| Q |
379 |
---caatgccaactcatttctttttagacaagcatccgacatggcacatgttctcttcacattgataacacaacttaatgttgatga |
462 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
21605287 |
gtacaatgccaactcatttcttcttagacatgcatcagacatagcacatgttctctttacatcaataacacaactttatgttgatga |
21605373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27570181 - 27570223
Alignment:
| Q |
1 |
catatactgcaagatagccctttggtacattcacagcttttga |
43 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
27570181 |
catatactgcaagatatccctttggcacatccacagcttttga |
27570223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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