View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_13 (Length: 467)
Name: NF16507_low_13
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_13 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 103 - 335
Target Start/End: Complemental strand, 8631982 - 8631740
Alignment:
| Q |
103 |
gatcaagttcctattaccccatccaacaaaaacttataacttagactacttttgtaagataaaatcttatattagtgaaaagttatgataaatttatttt |
202 |
Q |
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| T |
8631982 |
gatcaagttcctattaccccatccagcaaaaacttataacttagactacttttgtaagataaaatcttatattagtgaaaagttgtgataaatttatttt |
8631883 |
T |
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| Q |
203 |
gtt----------atattcgattgtcttattgcgaatataatataaatgtcatacatgttagtcgcaactagcaatttaaaaataatttgttcaaaaaca |
292 |
Q |
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||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8631882 |
gtttcattccattatatttgattgtcttattgcgaatataatataaatatcatacatgttagtcgtaactagcaatttaaaaataatttgttcaaaaaca |
8631783 |
T |
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| Q |
293 |
atcttcatctatattagtgaaaagtctagtatctccttatttt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
8631782 |
gtcttcatctatattagtgaaaagtctagtatctccttatttt |
8631740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 42078217 - 42078120
Alignment:
| Q |
8 |
gagaagaagcaagttgggaattactactctacaaaggtatgt----------ggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
95 |
Q |
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| T |
42078217 |
gagaagaagcaagttgggaattactactctacaaaggtatgttgaagtagagtgcaaagcatctaatgtttattatggctacagcgacaaattatttt |
42078120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 37609136 - 37609285
Alignment:
| Q |
103 |
gatcaagttcctattaccccatccaacaaaaacttataacttagactacttttgtaagataaaatcttatattagtgaaaagttatgataaatttatttt |
202 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37609136 |
gatcaagttcctattaccccatccagcaaaaacttttaacttagacta-ttttgtaagataaaatcttatattagtgaaaagttgtgataaatttatttt |
37609234 |
T |
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| Q |
203 |
g----------ttatattcgattgtcttattgcgaatataatataaatgtc |
243 |
Q |
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| T |
37609235 |
gtttcattccattatatttgattgtcttattgcgaatataatataaatgtc |
37609285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 37717674 - 37717587
Alignment:
| Q |
8 |
gagaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
95 |
Q |
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| T |
37717674 |
gagaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
37717587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 21542945 - 21542824
Alignment:
| Q |
332 |
tttttatcaactttgtttatctgcatctaaggttagaaatttgtagggaattgagtggtttttgattgtaaattttgtccatttgttgtgtatgcata-t |
430 |
Q |
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|||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
21542945 |
tttttatcaactttgtttatctgcatttaatgttggaaatttgcagggaattgagaggtttttgattgtaaattttgtccatttgttgtgtatacatatt |
21542846 |
T |
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| Q |
431 |
ttatggaactggtgtttatttt |
452 |
Q |
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| T |
21542845 |
ttatggaactggtgtttatttt |
21542824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 4437487 - 4437573
Alignment:
| Q |
9 |
agaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
95 |
Q |
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| T |
4437487 |
agaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
4437573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 46593352 - 46593265
Alignment:
| Q |
8 |
gagaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
95 |
Q |
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| T |
46593352 |
gagaagaagcaagttgggaattactactctacaaaggtatgtggcgaagcatctaatgtttattatggctacagcggcaaattatttt |
46593265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 46673531 - 46673457
Alignment:
| Q |
230 |
ataatataaatgtcatacatgttagtcgcaactagcaatttaaaaataatttgttcaaaaacaatcttcatctat |
304 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46673531 |
ataatataaatgtcttacatgttagtcacaactagcaatttaaaaataatttgtccaaaaacaatcttcatctat |
46673457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 72741 - 72842
Alignment:
| Q |
204 |
ttatattcgattgtcttattgcgaatataatataaatgtcatacatgttagtcgcaactagcaatttaaaaataatttgttcaaaaacaatcttcatcta |
303 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||| || ||||||| |||| |||||||||||| |
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| T |
72741 |
ttatattcgatt-tcttattgtgaatataaggtaaatgtcatacatgttagtagcaactaacaatttaaagatcatttgtttaaaactaatcttcatcta |
72839 |
T |
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| Q |
304 |
tat |
306 |
Q |
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||| |
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|
| T |
72840 |
tat |
72842 |
T |
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