View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_16 (Length: 447)
Name: NF16507_low_16
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 7 - 447
Target Start/End: Complemental strand, 26846665 - 26846225
Alignment:
| Q |
7 |
gtgagatgaaacctgctgtgttgcttggtaagtttgttgatttcatggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaata |
106 |
Q |
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| T |
26846665 |
gtgagaagaaacctgttgtgttgcttggtaagtttgttgatttcatggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaata |
26846566 |
T |
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| Q |
107 |
gatatgcacgcctctcctgcaataaaaatgttatttcctatattgctcggtcttttattttaaacattaaacaaatatgaccatatttttggatcatata |
206 |
Q |
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| T |
26846565 |
gatatgcacgcctctcctgcaataaaaatgttatttcctatattgctcagtcttttattttaaacattaaacaaatatgaccatatttttggatcatata |
26846466 |
T |
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| Q |
207 |
ggctatgatcttcatcctattttattgataaacaagttttaaatcgtgctcgtgtgatattgatattgttgaaaatcagtcaaagaaggctgatactgcc |
306 |
Q |
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| T |
26846465 |
agctatgatcttcatcctattttattgataaacaagttttaaatcgtgctcgtgtgatattgatattgttgaaaatcagtcaaagaaggctgatactgcc |
26846366 |
T |
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| Q |
307 |
tcaactgcagttgtgttgcagttacacatacatcaaaactttgatgctgcaacttgtttttaagataaaaccctgttgaaagtagtaagaaatagagaag |
406 |
Q |
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| T |
26846365 |
tcaactgcagttgtgttgcagttacacatacatcaaaactttgatgctgcaacttgtttttaagataaaaccctgttgaaagtagtaagaaatagagaag |
26846266 |
T |
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| Q |
407 |
gaatgtaccttgcagatatcacagagaggagtgtctttgga |
447 |
Q |
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| T |
26846265 |
gaatgtaccttgcagatatcacagagaggggtgtctttgga |
26846225 |
T |
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Back To:
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 54881202 - 54881118
Alignment:
| Q |
50 |
catggataggaatgtcacattccctgcaaagtattgctctgtcttctttgcaaaatagatatgcacgcctctcctgcaataaaaa |
134 |
Q |
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||||||| |||| ||||||||| ||||| || || ||||| ||||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
54881202 |
catggattggaaggtcacattctctgcatagaatcgctctatcttcttggcaaaatagatatccacgcctctcctgcaacaaaaa |
54881118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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