View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16507_low_2 (Length: 733)

Name: NF16507_low_2
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16507_low_2
NF16507_low_2
[»] chr4 (23 HSPs)
chr4 (96-733)||(11787246-11787884)
chr4 (96-733)||(11799413-11800051)
chr4 (631-733)||(11783951-11784053)
chr4 (634-733)||(11697767-11697866)
chr4 (642-733)||(11707483-11707574)
chr4 (642-733)||(11676260-11676351)
chr4 (642-733)||(11684539-11684630)
chr4 (85-244)||(30626587-30626746)
chr4 (1-54)||(11787129-11787182)
chr4 (1-54)||(11799296-11799349)
chr4 (85-193)||(30626925-30627032)
chr4 (97-239)||(54953732-54953872)
chr4 (107-193)||(12689792-12689879)
chr4 (97-189)||(12690000-12690090)
chr4 (116-194)||(15844921-15844996)
chr4 (86-152)||(30064249-30064315)
chr4 (140-195)||(15845133-15845188)
chr4 (100-151)||(41148262-41148313)
chr4 (105-152)||(47742329-47742376)
chr4 (86-152)||(30064098-30064163)
chr4 (86-152)||(33508983-33509049)
chr4 (116-194)||(48188275-48188351)
chr4 (163-247)||(3369847-3369932)
[»] chr7 (15 HSPs)
chr7 (85-194)||(35828403-35828512)
chr7 (85-247)||(15327897-15328057)
chr7 (85-247)||(24432336-24432497)
chr7 (85-246)||(35828562-35828724)
chr7 (85-257)||(35793365-35793538)
chr7 (107-244)||(24432569-24432705)
chr7 (108-152)||(43077976-43078020)
chr7 (108-152)||(43091954-43091998)
chr7 (139-245)||(27756267-27756374)
chr7 (111-193)||(9477188-9477270)
chr7 (108-194)||(9477365-9477450)
chr7 (85-153)||(282570-282637)
chr7 (100-193)||(47030330-47030420)
chr7 (100-152)||(44565516-44565565)
chr7 (100-153)||(47030542-47030595)
[»] chr5 (15 HSPs)
chr5 (85-194)||(22408698-22408806)
chr5 (86-152)||(6464227-6464293)
chr5 (107-193)||(12167039-12167123)
chr5 (97-194)||(36628588-36628686)
chr5 (109-194)||(12166859-12166944)
chr5 (108-152)||(20126591-20126635)
chr5 (85-155)||(37426608-37426676)
chr5 (85-133)||(2427087-2427135)
chr5 (85-214)||(33087614-33087739)
chr5 (139-193)||(37426467-37426521)
chr5 (110-155)||(128454-128499)
chr5 (111-194)||(36501454-36501534)
chr5 (111-194)||(11168130-11168213)
chr5 (86-152)||(7899612-7899678)
chr5 (99-192)||(22408528-22408625)
[»] chr3 (13 HSPs)
chr3 (109-213)||(33687639-33687743)
chr3 (97-194)||(33687877-33687974)
chr3 (85-194)||(16883685-16883794)
chr3 (85-195)||(16883544-16883654)
chr3 (105-241)||(3354755-3354892)
chr3 (105-247)||(43902532-43902672)
chr3 (97-152)||(53255058-53255113)
chr3 (108-154)||(11413339-11413384)
chr3 (86-194)||(45333674-45333779)
chr3 (85-193)||(15313490-15313598)
chr3 (97-193)||(33381565-33381660)
chr3 (97-247)||(50420786-50420935)
chr3 (97-194)||(43902731-43902826)
[»] chr1 (20 HSPs)
chr1 (107-228)||(10231049-10231170)
chr1 (87-247)||(39384482-39384641)
chr1 (85-194)||(1406365-1406474)
chr1 (97-193)||(39384292-39384388)
chr1 (100-194)||(13574871-13574965)
chr1 (98-193)||(13575067-13575161)
chr1 (105-245)||(10532428-10532569)
chr1 (142-245)||(84228-84331)
chr1 (109-247)||(10532215-10532353)
chr1 (89-195)||(6940825-6940927)
chr1 (85-194)||(10230840-10230949)
chr1 (85-193)||(31651556-31651664)
chr1 (108-171)||(3814836-3814899)
chr1 (105-192)||(29816344-29816430)
chr1 (86-152)||(7196772-7196838)
chr1 (85-194)||(39411637-39411743)
chr1 (122-194)||(22347571-22347646)
chr1 (97-194)||(37008451-37008547)
chr1 (140-193)||(31907899-31907951)
chr1 (108-193)||(44743644-44743729)
[»] chr8 (11 HSPs)
chr8 (97-249)||(34232756-34232907)
chr8 (97-230)||(29219094-29219227)
chr8 (108-155)||(18896520-18896567)
chr8 (109-193)||(5899456-5899538)
chr8 (105-194)||(18929356-18929444)
chr8 (99-193)||(4694920-4695013)
chr8 (108-214)||(45522367-45522471)
chr8 (109-193)||(18929526-18929613)
chr8 (99-194)||(45522191-45522284)
chr8 (99-193)||(2044888-2044981)
chr8 (170-228)||(29219359-29219417)
[»] scaffold0286 (1 HSPs)
scaffold0286 (85-246)||(17639-17799)
[»] chr6 (9 HSPs)
chr6 (85-246)||(2164610-2164770)
chr6 (85-246)||(2176243-2176403)
chr6 (85-247)||(12101608-12101769)
chr6 (100-219)||(1614843-1614962)
chr6 (108-194)||(12798966-12799052)
chr6 (85-126)||(1894652-1894693)
chr6 (98-194)||(30369986-30370081)
chr6 (97-155)||(28574656-28574712)
chr6 (178-250)||(15139569-15139642)
[»] scaffold0400 (1 HSPs)
scaffold0400 (85-194)||(8591-8700)
[»] scaffold0365 (1 HSPs)
scaffold0365 (85-194)||(9234-9343)
[»] chr2 (14 HSPs)
chr2 (97-244)||(31227051-31227199)
chr2 (89-193)||(13491712-13491814)
chr2 (136-251)||(35125126-35125240)
chr2 (112-194)||(13491531-13491613)
chr2 (141-245)||(13025532-13025636)
chr2 (108-194)||(35500264-35500351)
chr2 (100-193)||(3198700-3198791)
chr2 (118-256)||(14289257-14289394)
chr2 (139-244)||(23993864-23993970)
chr2 (108-191)||(29370773-29370855)
chr2 (107-193)||(31226906-31226991)
chr2 (108-154)||(43519382-43519427)
chr2 (91-152)||(12802361-12802422)
chr2 (131-247)||(23993723-23993839)
[»] scaffold1088 (1 HSPs)
scaffold1088 (140-244)||(2077-2180)
[»] scaffold0025 (1 HSPs)
scaffold0025 (86-250)||(151518-151681)
[»] scaffold0172 (1 HSPs)
scaffold0172 (97-189)||(9604-9694)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-194)||(162216-162303)
[»] scaffold0294 (1 HSPs)
scaffold0294 (642-733)||(19547-19638)
[»] scaffold0316 (1 HSPs)
scaffold0316 (97-157)||(17608-17666)


Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 96 - 733
Target Start/End: Original strand, 11787246 - 11787884
Alignment:
Q  96 acgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttaga 195  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||     
T  11787246 acgtccacttcagcattgatttggtcaaaattgacctgagggaccaaaactgcaaaagggatggttcttagggggctggattgtattttattttgttagg 11787345  T
Q  196 aagctaaaatcgtaacttcctaatcc-tcaggggacaaaactgctattaagccaatattttaatgacaaactaccaactttgaaatttatcacacatgtt 294  Q
    |||| ||||||||||||| || || | | |||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11787346 aagccaaaatcgtaacttgctgatacattaggc--caaaactgctattaagccaatatttaaatgacaaactaccaactttgaaatttatcacacatgtt 11787443  T
Q  295 gcctctactttcgatgtatgatgtatatttacacccattagaacgtttttacgaaagtttaccatcaatctagacactaattcaaacacttgcaaaattg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11787444 gcctctactttcgatgtatgatgtatatttacacccattagaacgtttttacgaaagtttcccatcaatctagacactaattcaaacacttgcaaaattg 11787543  T
Q  395 cctta--atcacctgttttttcaacttttcttcaccacaatctttgtgtcgttgcaatgttgtaagtgtggcatagtcacttcatcaataccaaactgga 492  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  11787544 ccttataatcacctgtttttccaacttttcttcaccacaatctttgtgtcgttgcaatgttgtaagtgtggtatagtcacttcatctataccaaactgga 11787643  T
Q  493 taacggctatccttgtctgattccccttctcgccggaaactcttttgcaagtcttccattcatcaaaacagacatggaagtagtgggaagacattcagat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11787644 taacggctatccttgtctgattccccttctcgccggaaactcttttgcaagtcttccattcatcaaaacagacatggaagtagtgggaagacattcagat 11787743  T
Q  593 atccaaaaccagtcacaagttatcattgactcattgttttaatgaattgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattt 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11787744 atccaaaaccagtcacaagttatcattgactcattgttttaatgaattgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattt 11787843  T
Q  693 tgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11787844 tgttctcctcagtcacaagttatcttattcttcatctcact 11787884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 96 - 733
Target Start/End: Original strand, 11799413 - 11800051
Alignment:
Q  96 acgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttaga 195  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||     
T  11799413 acgtccacttcagcattgatttggtcaaaattgacctgagggaccaaaactgcaaaagggatggttcttagggggctggattgtattttattttgttagg 11799512  T
Q  196 aagctaaaatcgtaacttcctaatcc-tcaggggacaaaactgctattaagccaatattttaatgacaaactaccaactttgaaatttatcacacatgtt 294  Q
    |||| ||||||||||||| || || | | |||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11799513 aagccaaaatcgtaacttgctgatacattaggc--caaaactgctattaagccaatatttaaatgacaaactaccaactttgaaatttatcacacatgtt 11799610  T
Q  295 gcctctactttcgatgtatgatgtatatttacacccattagaacgtttttacgaaagtttaccatcaatctagacactaattcaaacacttgcaaaattg 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11799611 gcctctactttcgatgtatgatgtatatttacacccattagaacgtttttacgaaagtttcccatcaatctagacactaattcaaacacttgcaaaattg 11799710  T
Q  395 cctta--atcacctgttttttcaacttttcttcaccacaatctttgtgtcgttgcaatgttgtaagtgtggcatagtcacttcatcaataccaaactgga 492  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  11799711 ccttataatcacctgtttttccaacttttcttcaccacaatctttgtgtcgttgcaatgttgtaagtgtggtatagtcacttcatctataccaaactgga 11799810  T
Q  493 taacggctatccttgtctgattccccttctcgccggaaactcttttgcaagtcttccattcatcaaaacagacatggaagtagtgggaagacattcagat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11799811 taacggctatccttgtctgattccccttctcgccggaaactcttttgcaagtcttccattcatcaaaacagacatggaagtagtgggaagacattcagat 11799910  T
Q  593 atccaaaaccagtcacaagttatcattgactcattgttttaatgaattgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattt 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11799911 atccaaaaccagtcacaagttatcattgactcattgttttaatgaattgcagggactaggcttgttaacgttgtcggctatgctgccttccatcacattt 11800010  T
Q  693 tgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11800011 tgttctcctcagtcacaagttatcttattcttcatctcact 11800051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 631 - 733
Target Start/End: Original strand, 11783951 - 11784053
Alignment:
Q  631 ttaatgaattgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctc 730  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||| |||||||||||||||||| || ||||||||| ||||    
T  11783951 ttaatgatttgcagggactaggcttgttaacattgtcggctatgctgccttccattacaatttattctcctcagtcacaagtaatgttattcttcttctc 11784050  T
Q  731 act 733  Q
    |||    
T  11784051 act 11784053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 634 - 733
Target Start/End: Original strand, 11697767 - 11697866
Alignment:
Q  634 atgaattgcagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    ||||||| |||||||||||||||||||| || || ||||||||||||||  |||||| ||||||| |||| |||||||| ||||||||||||||||||||    
T  11697767 atgaattacagggactaggcttgttaacattatcagctatgcttccttcactcacatcttgttctactcaatcacaagtaatcttattcttcatctcact 11697866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 642 - 733
Target Start/End: Original strand, 11707483 - 11707574
Alignment:
Q  642 cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    |||||||||||||||||||| || || ||| |||| |||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  11707483 cagggactaggcttgttaacattatcagctttgctcccttcactcacattttgttctcctcaatcacaagtaatcttattcttcatctcact 11707574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 733
Target Start/End: Original strand, 11676260 - 11676351
Alignment:
Q  642 cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    |||||||||||||||||||| || || ||||||||||||||  ||||||  ||||||||| |||||||||| |||||||| |||||||||||    
T  11676260 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11676351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 642 - 733
Target Start/End: Original strand, 11684539 - 11684630
Alignment:
Q  642 cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    |||||||||||||||||||| || || ||||||||||||||  ||||||  ||||||||| |||||||||| |||||||| |||||||||||    
T  11684539 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11684630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 30626746 - 30626587
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||  ||||| |||| ||||||||||||||  || | | ||||||||||||||||| | ||| ||| ||| ||| ||||||||||    
T  30626746 ttacacacgtggcgtccatgtcagcgttgaattggtcaaaattggcttgggaggccaaaactgcaaaaggggcagtatttaggggactgaattgtatttt 30626647  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaactgctattaa 244  Q
     ||||||||| | || ||||||| || ||||| || || ||||| |||||||||||||||    
T  30626646 cttttgttaggaggccaaaatcgcaatttcctgatacttaggggccaaaactgctattaa 30626587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11787129 - 11787182
Alignment:
Q  1 atacaatacagccctctacgtgtgtaattatgttaattttatttattataaaaa 54  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11787129 atacaatcgagccctctacgtgtgtaattatgttaattttatttattataaaaa 11787182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11799296 - 11799349
Alignment:
Q  1 atacaatacagccctctacgtgtgtaattatgttaattttatttattataaaaa 54  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11799296 atacaatcgagccctctacgtgtgtaattatgttaattttatttattataaaaa 11799349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 30626925 - 30627032
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    ||||||||||| ||||||| ||||| |||| |||||||||||| |  || ||| ||||||||||||||||| | | | || |||||||| ||||||||||    
T  30626925 ttacacacatggcgtccacgtcagcgttgaattggtcaaaattagaatggggggccaaaactgcaaaaggggcagcactt-aggggctgaattgtatttt 30627023  T
Q  185 attttgtta 193  Q
    |||||||||    
T  30627024 attttgtta 30627032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 54953872 - 54953732
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaa 196  Q
    ||||||| ||| |||||||||||||||||||||  |||||| | ||||||||||||||    ||| ||||||||||| ||| |||||||||||||||       
T  54953872 cgtccacgtcaacattgacttggtcaaaattggcatgaggg-ctaaaactgcaaaaggagtagtacttaaggggctgaattatattttattttgtta-tg 54953775  T
Q  197 agctaaaatcgtaacttcctaatcctcaggggacaaaactgct 239  Q
     |  ||||||| ||||||||||| || ||||| ||||||||||    
T  54953774 ggtcaaaatcgcaacttcctaatacttagggggcaaaactgct 54953732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 12689879 - 12689792
Alignment:
Q  107 agcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaatta-aggggctggattgtattttattttgtta 193  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||||||| | ||||| |||| ||| |||  ||||||||||||||    
T  12689879 agcattgacatggtcaaaattggtctagggggccaaaactgcaaaagggacagcaattagagggactgaatttaattttattttgtta 12689792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 12690000 - 12690090
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttatttt 189  Q
    ||||||| ||||||||||||||||||||||||  ||  ||| |||||||||||||| |  | ||| ||| ||||||| |||||||||||||||    
T  12690000 cgtccacgtcagcattgacttggtcaaaattgccct--ggggccaaaactgcaaaatgagcagtacttagggggctgaattgtattttatttt 12690090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 15844996 - 15844921
Alignment:
Q  116 ttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||| ||| | |||||||||||||| || ||| ||||||| || |||||||||||||||||||||    
T  15844996 ttggtcaaaattggtctg-gggtcaaaaactgcaaaagg-acagtacttaaggg-ctagattgtattttattttgttag 15844921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 30064249 - 30064315
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| || ||||||| ||| | ||||||||||||||||||  ||||||| ||||||||||||||    
T  30064249 tacacacgtggcgtccacgtcaactttgacttggtcaaaattgacctgaggggccaaaactgcaaaa 30064315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 15845133 - 15845188
Alignment:
Q  140 caaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttaga 195  Q
    |||||||||||||||  | ||| ||| | |||||||||||||||||||||||||||    
T  15845133 caaaactgcaaaaggagcagtacttacgaggctggattgtattttattttgttaga 15845188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 41148313 - 41148262
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaa 151  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||| ||||||    
T  41148313 ccacatcagcattgacttggtcaaaattggtctagggggccaaaagtgcaaa 41148262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 47742376 - 47742329
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||| ||||||||||| ||||| ||||||||| ||||||||||||||    
T  47742376 tcagctttgacttggtcgaaatttgtctgaggggccaaaactgcaaaa 47742329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 30064163 - 30064098
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| |||||||||  |  |||||||||||||||||||||| | ||||| ||||||||||||||    
T  30064163 tacacacgtgacgtccatgtgtgcattgacttggtcaaaattggccagaggg-ccaaaactgcaaaa 30064098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 33509049 - 33508983
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| || ||||||| |  ||||||||||||||||||||  |||| ||| ||||||||||||||    
T  33509049 tacacacgtggcgtccacgtgtgcattgacttggtcaaaatttatctggggggccaaaactgcaaaa 33508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 48188275 - 48188351
Alignment:
Q  116 ttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||  | ||| |||||| ||||||| || | ||| ||||||||||| ||||||||||||||||||||    
T  48188275 ttggtcaaaattggttaggggg-ccaaaaatgcaaaatgg-cagtacttaaggggctgaattgtattttattttgttag 48188351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 3369932 - 3369847
Alignment:
Q  163 ttaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggggac-aaaactgctattaagcc 247  Q
    ||||||||||| ||||||||||||||||||||   || ||||||| |||||| | || || ||||| | ||||||| |||||||||    
T  3369932 ttaaggggctgaattgtattttattttgttagggggccaaaatcgcaacttcttgatacttagggggcaaaaactgatattaagcc 3369847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 35828512 - 35828403
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||  |||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  35828512 ttacacatgtgacgtccacgtcagcattgacttggtgaaaattggtctgaggggccaaaactgcaaaaggggcggtacttagggggctgaattgtatttt 35828413  T
Q  185 attttgttag 194  Q
     |||||||||    
T  35828412 gttttgttag 35828403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 85 - 247
Target Start/End: Original strand, 15327897 - 15328057
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||| |||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  15327897 ttacacacgtggcgtccacgtcagcattgacttgattaaaattggtctgagg--ccaaaactgcaaaagggacagtacttagggggctgtattgtatttt 15327994  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctcaggggac-aaaactgctattaagcc 247  Q
    ||||||||||   | |||||||  |||| |||||| || ||||||| ||||||||| |||||||    
T  15327995 attttgttag-gggttaaaatcacaactccctaatacttaggggactaaaactgctgttaagcc 15328057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 85 - 247
Target Start/End: Complemental strand, 24432497 - 24432336
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    ||||||||||| ||| |||  |||||||||||||||||||||||||||| |||  |||||||||||||||| | ||| ||| ||||||||| ||||||||    
T  24432497 ttacacacatggcgttcacaccagcattgacttggtcaaaattggtctggggg--caaaactgcaaaaggggcagtacttagggggctggactgtatttt 24432400  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctcag-gggacaaaactgctattaagcc 247  Q
    ||||| ||||  ||| ||||||| |||||| | || || || ||| ||||| ||||||||||||    
T  24432399 atttttttagggagccaaaatcgcaacttcttgatacttagtgggtcaaaattgctattaagcc 24432336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 35828562 - 35828724
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    ||||||||||||||||||| |||||||||||||| | |||||||| ||  ||| |||||| ||||||||||   ||| ||||||||||||||||||||||    
T  35828562 ttacacacatgacgtccacgtcagcattgacttgataaaaattggcctagggggccaaaaatgcaaaaggggtagtacttaaggggctggattgtatttt 35828661  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctca-ggggacaaaactgctattaagc 246  Q
    ||||| |||| | |  |||||| ||| ||| |||| || | |||| ||||||| |||||||||    
T  35828662 attttattaggaggtaaaaatcataatttcataatacttatggggtcaaaactactattaagc 35828724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 257
Target Start/End: Complemental strand, 35793538 - 35793365
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| |||||||||  ||||| |||  ||  ||||||||||| |  ||| |||||| |||||||||||| ||| ||||||||||| ||||||||||    
T  35793538 ttacacacgtgacgtccatgtcagcgttggatttttcaaaattggttttgggggccaaaattgcaaaagggacagtacttaaggggctgaattgtatttt 35793439  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctca-ggggacaaaactgctattaagccaatattttaa 257  Q
    ||||||||||    ||||||||| ||||||||||   | | |||| |||||||||||||||||||| |||||||    
T  35793438 attttgttaggggcctaaaatcgcaacttcctaaaatttagggggccaaaactgctattaagccaaaattttaa 35793365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 244
Target Start/End: Original strand, 24432569 - 24432705
Alignment:
Q  107 agcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatc 206  Q
    |||||||| |||||||||||| | |||  || ||||||||||||||||| |  || | |||||||| |||||||||||||||||||||  ||| ||||||    
T  24432569 agcattgatttggtcaaaattagcctggagg-ccaaaactgcaaaaggggcactattcaaggggctagattgtattttattttgttagtgagccaaaatc 24432667  T
Q  207 gtaacttcctaat-cctcaggggacaaaactgctattaa 244  Q
    | ||| ||||||| | | ||||| |||||||||||||||    
T  24432668 gcaac-tcctaatacttaaggggccaaaactgctattaa 24432705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 43077976 - 43078020
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43077976 gcattgacttggtcaaaattggtctggggggccaaaactgcaaaa 43078020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 43091954 - 43091998
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  43091954 gcattgacttggtcaaaattggtctgggtgaccaaaactgcaaaa 43091998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 27756374 - 27756267
Alignment:
Q  139 ccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaat-cctcaggggacaaaactg 237  Q
    |||||||||||| | || | ||| ||| | ||||||||||||||||||||||||||   || ||||||| |||| |||||| | | ||||| ||||||||    
T  27756374 ccaaaactgcaagaagggcagtacttaggaggctggattgtattttattttgttagggggccaaaatcgcaactacctaatacttaaggggccaaaactg 27756275  T
Q  238 ctattaag 245  Q
    ||||||||    
T  27756274 ctattaag 27756267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 9477270 - 9477188
Alignment:
Q  111 ttgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||||||||||||||| |||| | | ||||||||||||||||| |  || |||| |||| |  ||||||||||||||||||    
T  9477270 ttgacttggtcaaaattgatctgggaggccaaaactgcaaaaggggcaatacttaaagggcagttttgtattttattttgtta 9477188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 9477365 - 9477450
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||| || |  || |||||||||    |||||||||||||||||||    
T  9477365 gcattgacttggtcaaaattggtctg-ggggccaaaattgcaaaatgggcaatacttaaggggcgattttgtattttattttgttag 9477450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 282637 - 282570
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaag 153  Q
    ||||||||||| || |||| ||||||||||||||||||||||||| ||  ||| |||||| ||||||||    
T  282637 ttacacacatggcg-ccacatcagcattgacttggtcaaaattggcctagggggccaaaagtgcaaaag 282570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 47030420 - 47030330
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||| ||||||||||||||||||||||||||||   ||  ||||||||||||||   | ||| |||  ||| || |||||||||||||||||||    
T  47030420 ccacgtcagcattgacttggtcaaaattggtct---gggtcaaaactgcaaaagaagcagtacttagagggttgtattgtattttattttgtta 47030330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 44565516 - 44565565
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    |||| ||||||||||||||||||||||||| ||   |||||||||||||||||    
T  44565516 ccacatcagcattgacttggtcaaaattggcct---ggaccaaaactgcaaaa 44565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 47030542 - 47030595
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaag 153  Q
    |||| ||||||||||||| ||||||||||  || ||||||||||| ||||||||    
T  47030542 ccacatcagcattgactttgtcaaaattgaccttagggaccaaaattgcaaaag 47030595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 9e-29; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 22408698 - 22408806
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  22408698 ttacacacatgtcgtccacgttagcattgacttggtcaaaattggtctg-ggggccaaaactgcaaaagggacagtactaaggggactggattgtatttt 22408796  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  22408797 attttgttag 22408806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 6464227 - 6464293
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  6464227 tacacacgtggcgtccacgtcagctttgacttggtcaaaattggcctgaggggccaaaactgcaaaa 6464293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 12167039 - 12167123
Alignment:
Q  107 agcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||||||||||||||||||||||| |||| |||||||| |||||| | | ||| ||| || ||||||||||||||||||||||||    
T  12167039 agcattgacttggtcaaaattggtct-aggg-ccaaaactacaaaagaggcagtacttagggtgctggattgtattttattttgtta 12167123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 36628588 - 36628686
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactg-caaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||||| |||||||||||||| ||||||||| ||||||||| ||||| ||  |||||||||  || |||||||||| |||| ||||||||||| ||||    
T  36628588 cgtccacatcagcattgacttgatcaaaattgctctgagggatcaaaattgaaaaaagggacaatacttaaggggctagattatattttattttattag 36628686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 12166944 - 12166859
Alignment:
Q  109 cattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||||  |||||| | ||||||||||||| | | ||| | | || |||||||||||||||||||||||||    
T  12166944 cattgacttggtcaaaattggcttgaggggcaaaaactgcaaaagaggcagtactcagggagctggattgtattttattttgttag 12166859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 20126591 - 20126635
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  20126591 gcattgacttggtcaaaattggtctgaggggccaaaactgcaaaa 20126635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 37426608 - 37426676
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaaggg 155  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||| |  ||| |||||||||||||||||    
T  37426608 ttacacacatggcgtccacgtcagcattgactttgtcaaaattggtat--ggggccaaaactgcaaaaggg 37426676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 2427135 - 2427087
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctg 133  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  2427135 ttacacacatgacgtccacatcagcattgacttagtcaaaattagtctg 2427087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 33087739 - 33087614
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||| | ||||||||||| |||||||||| || | ||| ||||||||||||||||| | |||  || | ||||||||    ||||    
T  33087739 ttacacacgtggcgtccacgttagcattgactttgtcaaaattgatccggggggccaaaactgcaaaaggggcagtatctaggaggctggat----tttt 33087644  T
Q  185 attttgttagaaagctaaaatcgtaacttc 214  Q
    |||||||||||| |  ||||||| ||||||    
T  33087643 attttgttagaaggtcaaaatcgcaacttc 33087614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 37426521 - 37426467
Alignment:
Q  139 ccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||||||||||| | |||||| |||||| |||| |||||||||||||||||||    
T  37426521 ccaaaactgcaaaatgtacggtacttaaggagctgaattgtattttattttgtta 37426467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 128454 - 128499
Alignment:
Q  110 attgacttggtcaaaattggtctgagggaccaaaactgcaaaaggg 155  Q
    |||||||||||||||||||||| | || ||||||||||||||||||    
T  128454 attgacttggtcaaaattggtccggggaaccaaaactgcaaaaggg 128499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 36501534 - 36501454
Alignment:
Q  111 ttgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||| |||||||||||||  ||| ||  ||||||||||||||||| | ||| ||| ||||||| ||||||||||||||||||||    
T  36501534 ttgaattggtcaaaattgtactgggg--ccaaaactgcaaaaggggcagtagttagggggctg-attgtattttattttgttag 36501454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 11168130 - 11168213
Alignment:
Q  111 ttgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||  || ||| |||||| |||||||||| |  || || ||||||||  ||||| |||||||||||||    
T  11168130 ttgacttggtcaaaattggcttggggggccaaaattgcaaaaggggcaatacttcaggggctgagttgtaatttattttgttag 11168213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 7899612 - 7899678
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| || ||||||  ||||| ||||||||||||||||||||||| | | | ||||||||||||    
T  7899612 tacacacgtggcgtccaagtcagctttgacttggtcaaaattggtctgggaggctaaaactgcaaaa 7899678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 22408625 - 22408528
Alignment:
Q  99 tccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaagggg-----ctggattgtattttattttgtt 192  Q
    ||||| ||||||||||||| |||||||||  | || ||| ||||||||||||||| ||| ||| |||| |||     ||||||||||||||||||||||    
T  22408625 tccacgtcagcattgactttgtcaaaattaatttggggg-ccaaaactgcaaaagagacagtacttaatgggttggactggattgtattttattttgtt 22408528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 33687743 - 33687639
Alignment:
Q  109 cattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgt 208  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||   ||||||||||     
T  33687743 cattgacttggtcaaaattgatctgggggaccaaaactgcaataggggcggtacttagggggctggattgtattttattttgttagggggctaaaatcgc 33687644  T
Q  209 aactt 213  Q
    |||||    
T  33687643 aactt 33687639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 33687877 - 33687974
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| | | ||| ||| ||||||| ||||||||||||||||||||    
T  33687877 cgtccacgtcagcattgatttggtcaaaattggtctgggggaccaaaactgcaaaagaggcagtacttagggggctgaattgtattttattttgttag 33687974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 16883685 - 16883794
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || || |||| |||| ||||||||||||||||||| |||  | | ||||||||||||||||  | ||| ||| ||||||||||||||||||    
T  16883685 ttacacacgtggcggccacgtcaggattgacttggtcaaaattgatctcggaggccaaaactgcaaaaggagcagtacttagggggctggattgtatttt 16883784  T
Q  185 attttgttag 194  Q
    | ||||||||    
T  16883785 aatttgttag 16883794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 16883654 - 16883544
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| ||||| |||| |||||| ||||||||||||||||||| |  ||| |||||||| |||||||| | |||  ||  |||||| ||| ||||||    
T  16883654 ttacacacgtgacggccacgtcagcaatgacttggtcaaaattggtttagggggccaaaactacaaaaggggcagtagatagagggctgaattatatttt 16883555  T
Q  185 attttgttaga 195  Q
    |||||||||||    
T  16883554 attttgttaga 16883544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 3354892 - 3354755
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaa 204  Q
    ||||||||||||||||||||||||| ||| |||  |||| | ||||||  | |  || ||||||||||||||||||||||||||| |||| | || ||||    
T  3354892 tcagcattgacttggtcaaaattggcctgggggggcaaagcagcaaaattggcaatacttaaggggctggattgtattttattttcttaggaggccaaaa 3354793  T
Q  205 tcgtaacttcctaatcctca-ggggacaaaactgctat 241  Q
    ||| || ||||| || || | |||| ||||||||||||    
T  3354792 tcgcaatttcctgatacttagggggccaaaactgctat 3354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 43902672 - 43902532
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaa 204  Q
    |||||||||||||| |||||||||||||  |||  |||||||||||||||| |  || ||| |||| | ||||||||||||||||||||    || ||||    
T  43902672 tcagcattgacttgatcaaaattggtctcgggg--caaaactgcaaaaggggcaatacttagggggttagattgtattttattttgttaaggggccaaaa 43902575  T
Q  205 tcgtaacttcctaatcctcaggggacaaaactgctattaagcc 247  Q
    ||  ||||||||||| || | |||   ||||||||||||||||    
T  43902574 tcacaacttcctaatacttaaggggtcaaactgctattaagcc 43902532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 53255113 - 53255058
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| ||||| ||||||||||||||||||| ||||||  ||||||||||||||    
T  53255113 cgtccacgtcagctttgacttggtcaaaattggcctgaggagccaaaactgcaaaa 53255058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 11413384 - 11413339
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagg 154  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  11413384 gcattgacttggtcaaaattgatctgaggg-ccaaaactgcaaaagg 11413339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 45333779 - 45333674
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttta 185  Q
    |||||||||| || |||  ||||||||||||||||||||||||| ||   || |||||||||||||||| |   || |||  || ||| |||||||||||    
T  45333779 tacacacatggcggccatgtcagcattgacttggtcaaaattggcct---gggccaaaactgcaaaaggaaaaatacttagaggactgaattgtatttta 45333683  T
Q  186 ttttgttag 194  Q
    |||||||||    
T  45333682 ttttgttag 45333674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 15313490 - 15313598
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || |||| |||| | | |||| |||||||||||||||||  | | ||||||||||||||| | | ||| ||||| |  || ||||||||||    
T  15313490 ttacacacgtggcgtctactttaacgttgaattggtcaaaattggtctaggaggccaaaactgcaaaagagtcagtacttaagagcttgaattgtatttt 15313589  T
Q  185 attttgtta 193  Q
    |||||||||    
T  15313590 attttgtta 15313598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 33381660 - 33381565
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||||| |||||||||||||| | |||||||  ||||||| ||||||||| |||| || |  || ||| || |||| |||||||||||||||||||    
T  33381660 cgtccacgtcagcattgacttgattaaaattgacctgaggg-ccaaaactgtaaaatgggcaatacttagggagctgaattgtattttattttgtta 33381565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 247
Target Start/End: Original strand, 50420786 - 50420935
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaa 196  Q
    ||||||| |||||||||| |||||||||||||  ||  ||| |||||||||||||| || |  || |||  ||||| |||||| |||||||||||||       
T  50420786 cgtccacgtcagcattgatttggtcaaaattgacct--ggggccaaaactgcaaaatgggcaatacttagagggctagattgtgttttattttgttaagg 50420883  T
Q  197 agctaaaatcgtaacttcctaatcctcagg-ggacaaaactgctattaagcc 247  Q
     |  ||||||| |||||| |||| || ||| || ||||||||||||||||||    
T  50420884 ggtcaaaatcgcaacttcataatacttaggaggccaaaactgctattaagcc 50420935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 43902731 - 43902826
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||||| | ||||||||||| ||||||||||| ||| ||  |||||| || | ||| |||  || ||| |||||| |||||||||||||||||||||    
T  43902731 cgtccacgttagcattgactttgtcaaaattggcctgggg--ccaaaattgtataagtgacaatacttagggggctagattgtattttattttgttag 43902826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 10231049 - 10231170
Alignment:
Q  107 agcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatc 206  Q
    |||||||||||||| || ||||||||||||| ||||||||||||||||||| ||| ||| ||| ||| |||||||||||||||||||||  || ||||||    
T  10231049 agcattgacttggttaacattggtctgaggggccaaaactgcaaaagggacagtacttaggggactgaattgtattttattttgttagagggccaaaatc 10231148  T
Q  207 gtaacttcctaatcctcagggg 228  Q
    | |||||| |||| || |||||    
T  10231149 gaaacttcttaatacttagggg 10231170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 39384482 - 39384641
Alignment:
Q  87 acacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttat 186  Q
    |||||| || |||| || ||||||||||||||||||||||||||||| ||  |||||||||||||| || | ||| ||| ||||||||||||||||||||    
T  39384482 acacacgtggcgtctacgtcagcattgacttggtcaaaattggtctgggg--ccaaaactgcaaaaagggcagtacttagggggctggattgtattttat 39384579  T
Q  187 tttgttagaaagctaaaatcgtaacttcctaatcctcagggga-caaaactgctattaagcc 247  Q
    ||| |||| | || ||| ||| |||||||| || || |||||| ||||||| || |||||||    
T  39384580 tttattaggaggccaaattcgcaacttcctgatacttaggggaccaaaactactgttaagcc 39384641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 1406474 - 1406365
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||   ||| ||| || |||| ||||||||||    
T  1406474 ttacacacgtggcgtccacgtcagcattgacttggtcaaaattgacctgaggggccaaaactgcaaaaggggtagtacttagggcgctgaattgtatttt 1406375  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  1406374 attttgttag 1406365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 39384388 - 39384292
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||||| ||||||||||||||||||||||| ||| | ||| ||||||||| ||||||| ||||| ||| |||||| ||||||||||||||||||||    
T  39384388 cgtccacgtcagcattgacttggtcaaaattagtccggggggccaaaactgtaaaaggggcggtacttagggggcttgattgtattttattttgtta 39384292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 100 - 194
Target Start/End: Complemental strand, 13574965 - 13574871
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||| ||||||||||||||||||||||||  ||  |||||||||| ||||||||||   ||| ||||||||||| ||||||||||||||||||||    
T  13574965 ccacgtcagcattgacttggtcaaaattgacctaggggaccaaaattgcaaaaggggtagtacttaaggggctgaattgtattttattttgttag 13574871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 13575067 - 13575161
Alignment:
Q  98 gtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||| |||||||||||||||||||| |||  ||  |||||||||||||||||| | ||  || |||||||||||||||||||||||||||||||    
T  13575067 gtccacatcagcattgacttggtcaaa-ttgacctaggggaccaaaactgcaaaaagaacaatacttaaggggctggattgtattttattttgtta 13575161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 105 - 245
Target Start/End: Original strand, 10532428 - 10532569
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaa 204  Q
    ||||| |||| || |||||||||||||| ||||  |||||||||||||    |  || ||| |||||||||||||||||||||||||| ||  || ||||    
T  10532428 tcagcgttgaattagtcaaaattggtctcaggggtcaaaactgcaaaataagcaatacttagggggctggattgtattttattttgttggagggccaaaa 10532527  T
Q  205 tcgtaacttcctaat-cctcaggggacaaaactgctattaag 245  Q
    ||||||||||||||| | |  |||| ||||||||||||||||    
T  10532528 tcgtaacttcctaatacatagggggccaaaactgctattaag 10532569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 84228 - 84331
Alignment:
Q  142 aaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaactgctat 241  Q
    |||||||||||||| | ||| ||| | ||||||||||||||||||||||||||| ||| ||||| | |||||||| || || |||   ||||||||||||    
T  84228 aaactgcaaaaggggccgtacttatgaggctggattgtattttattttgttagagagccaaaattgcaacttcctgatacttaggatgcaaaactgctat 84327  T
Q  242 taag 245  Q
    ||||    
T  84328 taag 84331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 10532353 - 10532215
Alignment:
Q  109 cattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgt 208  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||| |   | ||| |||| |||||| |||||||||||||| |   |  |||||||     
T  10532353 cattgacttggtcaaaattggtatggggggccaaaactgcaaaaggggcaaaacttagggggttggattatattttattttgtt-gggggtcaaaatcgc 10532255  T
Q  209 aacttcctaatcctca-ggggacaaaactgctattaagcc 247  Q
    ||||||||||| || | |||| ||||||||||||||||||    
T  10532254 aacttcctaatacttagggggtcaaaactgctattaagcc 10532215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 6940825 - 6940927
Alignment:
Q  89 acacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattt 188  Q
    ||||||| ||||||| |||||||||| ||| |||||||||||||   || || |||||||||||  | | ||| |||| |||||||||||||||||||||    
T  6940825 acacatggcgtccacatcagcattgaattgatcaaaattggtct---gggcccaaactgcaaaataggccgtacttaa-gggctggattgtattttattt 6940920  T
Q  189 tgttaga 195  Q
    |||||||    
T  6940921 tgttaga 6940927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 10230949 - 10230840
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || |||||||  | ||||| |||||||||||||||  | | | | |||||||||||||| |||| ||| ||| |||| ||||||| |||||    
T  10230949 ttacacacgtggcgtccacgccggcattaacttggtcaaaattgacccgcgaggccaaaactgcaaaaaggacagtacttagggggttggattgaatttt 10230850  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  10230849 attttgttag 10230840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 31651556 - 31651664
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| |||||||||| || |||||||||| |||||||||||  |  ||| |||||||||||||| ||||  || ||||  || || ||| ||||||    
T  31651556 ttacacacgtgacgtccacatcggcattgactttgtcaaaattggcattgggggccaaaactgcaaaatggacaatagttaaatggttgaattatatttt 31651655  T
Q  185 attttgtta 193  Q
    |||||||||    
T  31651656 attttgtta 31651664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 3814899 - 3814836
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggc 171  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||  | || ||||||||||||    
T  3814899 gcattgactttgtcaaaattggtctggggggccaaaactgcaaaaaagtcgataattaaggggc 3814836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 29816344 - 29816430
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtt 192  Q
    |||||||||||||||||||||||||  || ||| |||||||||||||| ||||  || |||  ||| || ||||||||||||||||||    
T  29816344 tcagcattgacttggtcaaaattggcatg-ggggccaaaactgcaaaatggacaatacttagagggttgtattgtattttattttgtt 29816430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 7196838 - 7196772
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||||| || ||||||| ||||| ||||||||||||||||||| ||| ||| | ||||||||||||    
T  7196838 tacacacgtggcgtccacatcagctttgacttggtcaaaattggcctggggggctaaaactgcaaaa 7196772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 39411743 - 39411637
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||| |||||||||| ||| |||||||||||||   ||||||||||||| |||| |||  || |||   ||||| ||||||||||    
T  39411743 ttacacacgtggcgtccacgtcagcattgaattgctcaaaattggtct--cggaccaaaactgc-aaagagacaatacttagaaggctgaattgtatttt 39411647  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  39411646 attttgttag 39411637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 22347646 - 22347571
Alignment:
Q  122 aaaattggtctgagggaccaaaactgcaaaagggacggtaattaagggg---ctggattgtattttattttgttag 194  Q
    ||||||||| |||||| ||||||||||||||| | ||||| ||| || |   ||||||||||||||||||||||||    
T  22347646 aaaattggtatgaggggccaaaactgcaaaagaggcggtacttagggtggtgctggattgtattttattttgttag 22347571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 37008451 - 37008547
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||||| |||||  |||||||||||||||||| ||| ||| |||||| |||||||||| |  || ||| ||||| |  |||||||||||||||||||    
T  37008451 cgtccacgtcagctctgacttggtcaaaattggcctg-ggggccaaaattgcaaaaggggcaatacttagggggcagttttgtattttattttgttag 37008547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 31907899 - 31907951
Alignment:
Q  140 caaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||||||||||||||||||| || ||||  ||| ||||||||||||||||||    
T  31907899 caaaactgcaaaagggacggtactt-agggaatgggttgtattttattttgtta 31907951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 44743644 - 44743729
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||||| ||||||||||||||| || ||  ||||||||||||||| ||   || ||| ||||| |  ||||||||||||||||||    
T  44743644 gcattgatttggtcaaaattggtatggggagccaaaactgcaaaagagataatacttatggggcggttttgtattttattttgtta 44743729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 8e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 34232907 - 34232756
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaa 196  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| | | |||  || ||||||| ||||||||||||||| ||||      
T  34232907 cgtccacatcagcattgacttggtcaaaattggtctggggggccaaaactgcaaaagaggcagtacatagggggctgaattgtattttattttattaggg 34232808  T
Q  197 agctaaaatcgtaacttcctaatcctcaggggacaaaactgctattaagccaa 249  Q
     || ||||| | ||| ||||||| || ||||| ||||||||||||||| ||||    
T  34232807 ggccaaaattgcaac-tcctaatacttaggggccaaaactgctattaaaccaa 34232756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 29219227 - 29219094
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaa 196  Q
    ||||||| |||||||||||||||||||||||||  || ||| ||||||||||||||||| | ||| ||| |||| |||||||||||||||||| ||||      
T  29219227 cgtccacgtcagcattgacttggtcaaaattggcttggggggccaaaactgcaaaaggggccgtacttagggggttggattgtattttattttattaggg 29219128  T
Q  197 agctaaaatcgtaacttcctaatcctcaggggac 230  Q
      ||||||||  ||||||||||| || |||||||    
T  29219127 gactaaaatcacaacttcctaatacttaggggac 29219094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 18896567 - 18896520
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaaggg 155  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18896567 gcattgacttggtcaaaattggtctgagggaccaaaagtgcaaaaggg 18896520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 5899456 - 5899538
Alignment:
Q  109 cattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| | |  || ||| ||||||| |||||||||||||||||||    
T  5899456 cattgacttggtcaaaattggtctgggg--ccaaaactgcaaaagaggcaatacttagggggctgaattgtattttattttgtta 5899538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 18929444 - 18929356
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||||||||  |  | | |||||||| |||||||||   || ||||||||||||||||||||||||||||||||    
T  18929444 tcagcattgacttggtcaaaattggcattggaggccaaaactacaaaagggaaa-tacttaaggggctggattgtattttattttgttag 18929356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 4694920 - 4695013
Alignment:
Q  99 tccacttcagcattgacttggtcaaaattggtct-gagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||| || | ||| || |||||||| |||||||||||||||||||    
T  4694920 tccacgtcaacattgacttggtcaaaattgatctagaggg-ccaaaactgcaaaatgggcagtactt-aggggctgaattgtattttattttgtta 4695013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 214
Target Start/End: Original strand, 45522367 - 45522471
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcg 207  Q
    ||||||||||||| |||||||||||| ||  ||||||||||||||||| |  || ||| ||||| |  |||||||||||||||||||   ||||||||||    
T  45522367 gcattgacttggttaaaattggtctgggg--ccaaaactgcaaaaggggcaatacttagggggcggttttgtattttattttgttagggggctaaaatcg 45522464  T
Q  208 taacttc 214  Q
     ||||||    
T  45522465 caacttc 45522471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 18929526 - 18929613
Alignment:
Q  109 cattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctgg---attgtattttattttgtta 193  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| || ||||| ||| |||| |||   |||| ||||||||||||||    
T  18929526 cattgacttggtcaaaattggtctggggtgccaaaactgcaaaaaggtcggtatttagggggttggataattggattttattttgtta 18929613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 45522284 - 45522191
Alignment:
Q  99 tccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||| ||||| |||||||||||||||||| |||  ||| ||||||||||||||||| |  || ||| ||||| |  |||||||||||||||||||    
T  45522284 tccacatcagctttgacttggtcaaaattgatct--ggggccaaaactgcaaaaggggcaatacttagggggcggttttgtattttattttgttag 45522191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 2044888 - 2044981
Alignment:
Q  99 tccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    ||||| ||||||||| |||| ||||||||   ||  ||| ||||||||||||||||||   || ||| |||||| ||||||||||||||||||||    
T  2044888 tccacatcagcattgtcttgatcaaaatttacctagggggccaaaactgcaaaagggaaaatactta-ggggctagattgtattttattttgtta 2044981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 29219359 - 29219417
Alignment:
Q  170 gctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcagggg 228  Q
    |||||||||||| ||||||||||||   |||||||||| ||||||||||| || |||||    
T  29219359 gctggattgtatattattttgttagggggctaaaatcgcaacttcctaatacttagggg 29219417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 17799 - 17639
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||| |||| ||||||| | ||||||| |||||||||||||||  ||  ||  |||||||||||||||||| ||| ||| ||||||||||||||||||    
T  17799 ttacacgcatggcgtccacgttagcattgtcttggtcaaaattggcatg--ggcacaaaactgcaaaagggacagtacttagggggctggattgtatttt 17702  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctca-ggggacaaaactgctattaagc 246  Q
    ||||||||||   |  ||||||| |||||||| || |||| |||| |||||||||||||||||    
T  17701 attttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagc 17639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 2164610 - 2164770
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||| |||| ||||||| | ||||||| |||||||||||||||  ||  ||  |||||||||||||||||| ||| ||| ||||||||||||||||||    
T  2164610 ttacacgcatggcgtccacgttagcattgtcttggtcaaaattggcatg--ggcacaaaactgcaaaagggacagtacttagggggctggattgtatttt 2164707  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctca-ggggacaaaactgctattaagc 246  Q
    ||||||||||   |  ||||||| |||||||| || |||| |||| |||||||||||||||||    
T  2164708 attttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagc 2164770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 2176243 - 2176403
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||| |||| ||||||| | ||||||| |||||||||||||||  ||  ||  |||||||||||||||||| ||| ||| ||||||||||||||||||    
T  2176243 ttacacgcatggcgtccacgttagcattgtcttggtcaaaattggcatg--ggcacaaaactgcaaaagggacagtacttagggggctggattgtatttt 2176340  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctca-ggggacaaaactgctattaagc 246  Q
    ||||||||||   |  ||||||| |||||||| || |||| |||| |||||||||||||||||    
T  2176341 attttgttagggtgtcaaaatcgcaacttcctgatactcagggggccaaaactgctattaagc 2176403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 85 - 247
Target Start/End: Original strand, 12101608 - 12101769
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| || ||||||| ||| ||||||||||||||||||| |||| | |  |||||||||||||| || | ||| ||| ||||||||||||||||||    
T  12101608 ttacacacgtggcgtccacatcaacattgacttggtcaaaattagtcttaagagccaaaactgcaaaaagggcagtacttagggggctggattgtatttt 12101707  T
Q  185 attttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaactgctattaagcc 247  Q
    |||||||||| | || ||||||  ||||| || || || | ||||| ||||||||||||||||    
T  12101708 attttgttaggaggccaaaatcacaactttctgatacttaagggac-aaactgctattaagcc 12101769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 1614962 - 1614843
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagc 199  Q
    |||| |||||||||||||||||||||| || ||| |||| ||||||||||||| || |  || ||| |||||||||||||||||||||||||||| | ||    
T  1614962 ccacatcagcattgacttggtcaaaatgggcctgggggatcaaaactgcaaaatgggcaatatttagggggctggattgtattttattttgttaggaggc 1614863  T
Q  200 taaaatcgtaacttcctaat 219  Q
     | ||||| |||||||||||    
T  1614862 cacaatcgcaacttcctaat 1614843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 12798966 - 12799052
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||||| ||| ||| ||||||||||| |||||||  || ||| |||| ||  |||||||||||||||||||    
T  12798966 gcattgacttggtcaaaattggcctggggggccaaaactgcagaagggacaatacttagggggttgttttgtattttattttgttag 12799052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 1894652 - 1894693
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaat 126  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  1894652 ttacacacatggcgtccacatcagcattgacttggtcaaaat 1894693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 30369986 - 30370081
Alignment:
Q  98 gtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||| ||||| |||||| |||||||||||||||| | | |||||||||||||| || |  || || |||||| |  |||||||||||||||||||    
T  30369986 gtccacgtcagccttgactcggtcaaaattggtctgggaggccaaaactgcaaaatgggcaatactt-aggggcagttttgtattttattttgttag 30370081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 28574712 - 28574656
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaaggg 155  Q
    ||||||| ||||| || |||||||||||||||||||||  |||||||||| ||||||||    
T  28574712 cgtccacgtcagcgttcacttggtcaaaattggtctga--gaccaaaactacaaaaggg 28574656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 15139642 - 15139569
Alignment:
Q  178 gtattttattttgttagaaagctaaaatcgtaacttcctaatcctcagg-ggacaaaactgctattaagccaat 250  Q
    |||||||||||||||| |  || ||||||| ||||||||| | || ||| || |||||||||||||||||||||    
T  15139642 gtattttattttgttaaagggcaaaaatcgcaacttcctagtacttaggaggtcaaaactgctattaagccaat 15139569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 8700 - 8591
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| |||| ||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||   ||| ||| || |||| ||||||||||    
T  8700 ttacacacgtgacatccacgtcagcattgatttggtcaaaattggtctgggagaccaaaactgcaaaagggggagtacttatggagctgaattgtatttt 8601  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  8600 attttgttag 8591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 9343 - 9234
Alignment:
Q  85 ttacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttt 184  Q
    |||||||| |||| ||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||   ||| ||| || |||| ||||||||||    
T  9343 ttacacacgtgacatccacgtcagcattgatttggtcaaaattggtctgggagaccaaaactgcaaaagggggagtacttatggagctgaattgtatttt 9244  T
Q  185 attttgttag 194  Q
    ||||||||||    
T  9243 attttgttag 9234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 97 - 244
Target Start/End: Original strand, 31227051 - 31227199
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtct-gagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttaga 195  Q
    ||||||| ||| ||||| |||||| ||||||||||| ||||| |||||||||||| ||||||  || |||| |||||| |||||||||||||||||||||    
T  31227051 cgtccacgtcatcattggcttggtaaaaattggtctagaggg-ccaaaactgcaagagggacaatacttaaagggctgtattgtattttattttgttaga 31227149  T
Q  196 aagctaaaatcgtaacttcctaatcctcagg-ggacaaaactgctattaa 244  Q
      |  ||||||| |||||||| ||  | ||| || |||||||||||||||    
T  31227150 gggtcaaaatcgcaacttcctgatatttaggaggccaaaactgctattaa 31227199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 13491712 - 13491814
Alignment:
Q  89 acacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattt 188  Q
    |||| ||||||||||  ||||||| |||||||||||||||| ||||||| |||||||||||||| || |  || ||| |||| |||||||||||||||||    
T  13491712 acacgtgacgtccaca-cagcatttacttggtcaaaattggcctgaggggccaaaactgcaaaatgg-caatacttagggggatggattgtattttattt 13491809  T
Q  189 tgtta 193  Q
    |||||    
T  13491810 tgtta 13491814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 35125126 - 35125240
Alignment:
Q  136 ggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaac 235  Q
    |||||||||||||||||||| ||||| || |||||||| |||||||||| |||||||||   |  |||||||  |||||||||| || ||||| ||||||    
T  35125126 ggaccaaaactgcaaaaggggcggtactt-aggggctgaattgtattttcttttgttagggggtcaaaatcgctacttcctaatacttaggggccaaaac 35125224  T
Q  236 tgctattaagccaata 251  Q
    || ||||||| |||||    
T  35125225 tgttattaagtcaata 35125240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 13491613 - 13491531
Alignment:
Q  112 tgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||||||| | |||||||| ||||| || | ||| ||| |||| || ||||||||||||||||||||    
T  13491613 tgacttggtcaaaattggtctgagcggccaaaactacaaaaagggcagtacttacggggatgtattgtattttattttgttag 13491531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 13025636 - 13025532
Alignment:
Q  141 aaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaactgcta 240  Q
    ||||||||||||| ||| ||| ||||||| ||| ||||||||||||| ||||||| ||  ||||||  |||||||||||  | ||||  |||||||||||    
T  13025636 aaaactgcaaaagagacagtacttaagggactgaattgtattttattctgttagatagtcaaaatcacaacttcctaatatttagggatcaaaactgcta 13025537  T
Q  241 ttaag 245  Q
    |||||    
T  13025536 ttaag 13025532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 35500264 - 35500351
Alignment:
Q  108 gcattgacttggtcaaaattggtctgaggga-ccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    |||||||||||||||||||| ||||| |||  ||||||||||||||||| |  || ||||||||| |  |||||||||||||||||||    
T  35500264 gcattgacttggtcaaaattagtctgtgggggccaaaactgcaaaaggggcaatacttaaggggcggttttgtattttattttgttag 35500351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 3198700 - 3198791
Alignment:
Q  100 ccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||| ||||||||||||||||||||||||||||  |||  ||||||| ||||||||   ||| |||  |||||| |||||||||||||||||||    
T  3198700 ccacgtcagcattgacttggtcaaaattggtct--ggggtcaaaactacaaaaggggtcgtacttagagggctgaattgtattttattttgtta 3198791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 14289394 - 14289257
Alignment:
Q  118 ggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttccta 217  Q
    |||||||||||| || |||  ||||||||||||||| | | ||| ||||||||||  ||||||||||||||||||||   || ||||||| |||||| |     
T  14289394 ggtcaaaattggcct-aggagccaaaactgcaaaagaggcagtacttaaggggctaaattgtattttattttgttagggggccaaaatcgcaacttcatg 14289296  T
Q  218 atcctcaggggacaaaactgctattaagccaatatttta 256  Q
    || || ||| |  |||||||||||||||||  |||||||    
T  14289295 atacttaggaggaaaaactgctattaagcctttatttta 14289257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 23993864 - 23993970
Alignment:
Q  139 ccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggg-gacaaaactg 237  Q
    |||||||||||||| |||| ||| ||| | ||||||||||||||||||||||||||   || ||||| | |||||| |||| || |||| | ||||||||    
T  23993864 ccaaaactgcaaaaaggacagtatttaggaggctggattgtattttattttgttagggggccaaaattgcaacttcttaatacttagggagccaaaactg 23993963  T
Q  238 ctattaa 244  Q
    |||||||    
T  23993964 ctattaa 23993970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 29370855 - 29370773
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgt 191  Q
    |||||||||||||||||||||   || ||| ||||||||||||||||| | ||| ||||||||| |  ||||||||||||||||    
T  29370855 gcattgacttggtcaaaattgacttggggg-ccaaaactgcaaaaggggcagtacttaaggggcagttttgtattttattttgt 29370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 31226991 - 31226906
Alignment:
Q  107 agcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgtta 193  Q
    |||||||||||||||||||||||  || ||| | |||||||||||||||   ||| ||| |||| | ||||||||||||||||||||    
T  31226991 agcattgacttggtcaaaattggcatgggggtc-aaaactgcaaaaggggtagtacttagggggtttgattgtattttattttgtta 31226906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 43519382 - 43519427
Alignment:
Q  108 gcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagg 154  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  43519382 gcattgacttggtcaaaattggtctg-gggaccaaaagtgcaaaagg 43519427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 12802361 - 12802422
Alignment:
Q  91 acatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaa 152  Q
    ||||| ||||||| ||||| |||||||| ||||||||||||||   || |||||||||||||    
T  12802361 acatggcgtccacgtcagctttgacttgatcaaaattggtctggaagatcaaaactgcaaaa 12802422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 23993839 - 23993723
Alignment:
Q  131 ctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcagggga- 229  Q
    ||||||| ||||||||||||||  |||  || |||  |||||||||| |||||||||||||| || | | ||||||| ||||| || || || ||||||     
T  23993839 ctgaggggccaaaactgcaaaaaagacaatacttatagggctggattatattttattttgttggaga-ccaaaatcgcaactttctgatacttaggggat 23993741  T
Q  230 caaaactgctattaagcc 247  Q
     |||||||||||||||||    
T  23993740 aaaaactgctattaagcc 23993723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1088 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 2077 - 2180
Alignment:
Q  140 caaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttagaaagctaaaatcgtaacttcctaatcctcaggggacaaaactgct 239  Q
    ||||||| ||||||| || ||| ||||||||||| ||||||||||||||||||||   || ||||||| ||||| ||||| || || |||||||||||||    
T  2077 caaaactacaaaagg-acagtacttaaggggctgaattgtattttattttgttagggggccaaaatcgcaactttctaatgcttagaggacaaaactgct 2175  T
Q  240 attaa 244  Q
    |||||    
T  2176 attaa 2180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 151518 - 151681
Alignment:
Q  86 tacacacatgacgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtatttta 185  Q
    ||||||| || ||| ||| ||||||||||| ||||||||||| |||    |||||||||||||||||||| | ||| ||| ||||||| |||||||||||    
T  151518 tacacacgtggcgttcacgtcagcattgacctggtcaaaatt-gtcccgtggaccaaaactgcaaaaggggcagtacttagggggctgaattgtatttta 151616  T
Q  186 ttttgttagaaagctaaaatcgtaacttcctaatcctcagg-ggacaaaactgctattaagccaat 250  Q
    | |||||||   |||||||||  || ||||| || || ||| |||||||||||| |||||| ||||    
T  151617 tattgttagggggctaaaatcacaa-ttcctgatacttaggaggacaaaactgcaattaagtcaat 151681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 9694 - 9604
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttatttt 189  Q
    ||||||| |||||||||||||| ||||||||||||||  | | ||||| |||||||||| || || ||||||||||| |||||||||||||||    
T  9694 cgtccacgtcagcattgacttgatcaaaattggtctg-tgaaacaaaattgcaaaaggg-cgatacttaaggggctgaattgtattttatttt 9604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 162216 - 162303
Alignment:
Q  105 tcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggacggtaattaaggggctggattgtattttattttgttag 194  Q
    ||||||||||||| ||||||||||  ||   |||||||||||||||||| |||  || |||| |||||| ||||||||||||||||||||    
T  162216 tcagcattgacttagtcaaaattgacct--aggaccaaaactgcaaaagagacaatacttaaagggctgtattgtattttattttgttag 162303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 642 - 733
Target Start/End: Original strand, 19547 - 19638
Alignment:
Q  642 cagggactaggcttgttaacgttgtcggctatgcttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcact 733  Q
    ||||||||||||||||||||  | ||  |||| ||||||||  || ||| ||||||| |||| |||||||| |||||||||||||| |||||    
T  19547 cagggactaggcttgttaacactatcaactattcttccttcactcgcatcttgttctactcaatcacaagtaatcttattcttcatttcact 19638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 17608 - 17666
Alignment:
Q  97 cgtccacttcagcattgacttggtcaaaattggtctgagggaccaaaactgcaaaagggac 157  Q
    ||||||| |||||||||||||||  |||||||| ||  |||| ||||||||||||||||||    
T  17608 cgtccacgtcagcattgacttggataaaattggact--gggatcaaaactgcaaaagggac 17666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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