View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_21 (Length: 378)
Name: NF16507_low_21
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 51185950 - 51186142
Alignment:
| Q |
113 |
gagtttgaattttagttgaaacaatccttatcaaactttacttacttacaactttaaattactagagttttttctcaggaaccctaggattaagaaaaat |
212 |
Q |
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| T |
51185950 |
gagtttgaattttagttgaaacaatccttatcaaactttacttacttacaactttaaattactagagttttttctcaggaaccctaggattaagaaaaat |
51186049 |
T |
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| Q |
213 |
aaataaataaaagacaggtctggttgttcaaaagagtgagattgaaaatgtgttccattttgattgatgggattcgatcataagattaagaac |
305 |
Q |
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| T |
51186050 |
aaataaataaaagacaggtctggttgttcaaaagagtgagattgaaaatgtgttccattttgattgatgggattcgatcataagattaagaac |
51186142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 51186159 - 51186209
Alignment:
| Q |
328 |
tacaaaagacagtcctttactgaaagggactactaccctgaagtttcttct |
378 |
Q |
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| T |
51186159 |
tacaaaagacagtcctttagtgaaagggactactaccctgaagtttcttct |
51186209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 14171233 - 14171135
Alignment:
| Q |
123 |
tttagttgaaacaatccttatcaaactttacttacttacaactttaaattactagag-ttttttctcaggaaccctaggattaagaaaaataaataaat |
220 |
Q |
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| T |
14171233 |
tttagttaaaacaatccttatcaaacttcacttacttacaaattcacattactagagcttttttcttaggaaccctaggattaagaaaaataaataaat |
14171135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 14170741 - 14170692
Alignment:
| Q |
238 |
gttcaaaagagtgagattgaaaatgtgttccattttgattgatgggattc |
287 |
Q |
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| T |
14170741 |
gttcaaaagagtgagattaaaaatgtgttccattttggttgatgggattc |
14170692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 14170580 - 14170543
Alignment:
| Q |
341 |
cctttactgaaagggactactaccctgaagtttcttct |
378 |
Q |
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| T |
14170580 |
cctttactgaaagggactactaccctgaagtttcttct |
14170543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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