View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_24 (Length: 358)
Name: NF16507_low_24
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 16191845 - 16191488
Alignment:
| Q |
3 |
cgagtgaaaagaaatgtacttacaacttttcctttattgagcaactcgaaaaatatattgaagattgactttggtgaattgaatggttgtcaaagtcttc |
102 |
Q |
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| T |
16191845 |
cgagtgaaaagaaatgtacttacaacttttcctttatggagcaactcaaaaaagatattgaagattgactttggtgaattgaatggttgtcaaagtcttc |
16191746 |
T |
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| Q |
103 |
aaatcatttttctatatttataatactcttaaaacaaaacataaaactagatattctccctctctcttttaaaaactttctgtcaaacaaggagagggat |
202 |
Q |
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| T |
16191745 |
aaatcatttttctatatttataatacgcttaaaacaaaacataaaattagatattctccctctctcttttaaaaactttctgtcaaacaaggagagggat |
16191646 |
T |
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| Q |
203 |
ttttgtat-ccttttcccttttgtctcctccctccatagtcattctactcaatgtccctccattcctctactaactcctaaac-aagccttagattttac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16191645 |
ttttgtatcccttttcccttttgtctcctccctccatagtcattctactccatgtccctccattcctctactaactcctaaacaaagccttagattttac |
16191546 |
T |
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| Q |
301 |
ttaaatcatttgtagtcatgataccacactactatctctcgactggtacaagtcgatc |
358 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
16191545 |
ttaaatcatttgtagtcatgatacaacactactatctctggactggtacaagtcgatc |
16191488 |
T |
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