View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_26 (Length: 331)
Name: NF16507_low_26
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 34596600 - 34596280
Alignment:
| Q |
7 |
gttatgccttgattaatcttacatacatatatactttcttgtcaagattaacgagttccacattttaatataaatatatcaatgtaggnnnnnnnnnn-- |
104 |
Q |
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| T |
34596600 |
gttatgccttgattaatcttacatacatatatactttcttgtcaagattaacgagttccacattttaatataaatatatcaatgtaggtttttttttttt |
34596501 |
T |
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| Q |
105 |
-----gacaaaatatactaatgtacgttttagaagtcgctttacaattctaatgcatcattaataatgtttataagttgctttataactccaatgcatca |
199 |
Q |
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| T |
34596500 |
ttgttgacaaaatataccaatgtaggttttagaagtcgctttacaattctaatgcatcattaataatgtttataagttgctttataactccaatgcatca |
34596401 |
T |
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| Q |
200 |
ttaataattactttcttgttaagattaattattattttttaagtcgatttactattcaaatgcatcattaataat------aaaaaattctatcatacct |
293 |
Q |
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| T |
34596400 |
ttaataattactttcttgttaagattaatt----ttttttaagtcgatttactattcaaatgcataattaataataataaaaaaaaattctatcatatct |
34596305 |
T |
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| Q |
294 |
tgtattcatttattactctctcttc |
318 |
Q |
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| | |||||||||||||||||||| |
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| T |
34596304 |
ttttatcatttattactctctcttc |
34596280 |
T |
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