View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_28 (Length: 324)
Name: NF16507_low_28
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 1600090 - 1599762
Alignment:
| Q |
13 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaacttt----------------acaagacattggatgagatggtgaggtg |
96 |
Q |
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| T |
1600090 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaactttggtaaattacaactttacaagacattggatgagatggtgaggtg |
1599991 |
T |
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| Q |
97 |
atgctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
196 |
Q |
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| T |
1599990 |
aggctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
1599891 |
T |
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| Q |
197 |
ttcgttactt-aaataacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttatgcaagat |
295 |
Q |
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| T |
1599890 |
ttctttacttaaaataacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttatgcaagat |
1599791 |
T |
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| Q |
296 |
acctattgaatcctttcttgacttgaatt |
324 |
Q |
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| T |
1599790 |
acctattgaatactttcttgacttcaatt |
1599762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 5769010 - 5769071
Alignment:
| Q |
106 |
atattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggt |
167 |
Q |
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| T |
5769010 |
atatttctggagtctaggaatggatacctgatttcttcttctgctggaaggtgtgatttggt |
5769071 |
T |
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