View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_29 (Length: 315)
Name: NF16507_low_29
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 7457176 - 7456902
Alignment:
| Q |
23 |
tgtgggaatagccgaatacggcgatcaagcaagattttgtagaccataatgtcttaactagcaagatgcgagctctgcctataaatactaattgtaatta |
122 |
Q |
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| T |
7457176 |
tgtgggaatagccgaatacggcaatcaagcaagattttgtagaccataatgtcttaaccagcaagatgcgagctctgcctataaatactaattgtaatta |
7457077 |
T |
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| Q |
123 |
acatttacgacacacacaattgttagaaatcggtacatatacaaactatacgttattgatgttttgacgatgacaaactgacacgaaaacaaaagagcac |
222 |
Q |
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| T |
7457076 |
acatttacgacacacacaattgttagaaataggtacatatacaaactatacgttattgatgttttgacgatgacaaactgacacaaaaacaaaagagcac |
7456977 |
T |
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| Q |
223 |
ttttcctactaattgtttacgtctgcaaaacaggttctagaagcataagctttggatatctcatgattctggtat |
297 |
Q |
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| T |
7456976 |
tttgcctactaattgtttaagtctgcaaaacaggttctagaagcataagctttggatatctcatgattctggtat |
7456902 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 13219749 - 13219802
Alignment:
| Q |
85 |
aagatgcgagctctgcctataaatactaattgtaattaacatttacgacacaca |
138 |
Q |
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| T |
13219749 |
aagatgcgagttctacctataaatactcattgtacttaacattttggacacaca |
13219802 |
T |
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