View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_30 (Length: 314)
Name: NF16507_low_30
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 39380982 - 39381281
Alignment:
| Q |
1 |
ccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatgtaataataaataagttgtttctataaactctcttaaa |
100 |
Q |
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| T |
39380982 |
ccctaaattattatggagagctaagagcttatgtaaataagttcaaaattgtttatggacatttaataataaataagttgtttctataaactctcttaaa |
39381081 |
T |
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| Q |
101 |
gagattcccaaatacttatgctagtaggtaatctcaaataaatcggtttaaatagacacttactatcttgattcaataatctgtttctacaggttctgct |
200 |
Q |
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| T |
39381082 |
gatattcacaaatacttatgctagtaggtaatctcaaataagtcggtttaaatatacacttactatcttgattcaataatctgtttctgcaggttctgct |
39381181 |
T |
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| Q |
201 |
aacagcatgctctctactcaacatgtttcccatgctaacaaattcgtcaatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
300 |
Q |
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| T |
39381182 |
aacagcatgctctctactcaacatgtttcccatgctaacaaattcatcaatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
39381281 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 6987783 - 6987738
Alignment:
| Q |
24 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataa |
69 |
Q |
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|||||||||| ||||||||| ||||| |||||||||||||| |||| |
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| T |
6987783 |
agagcttatggaaataagttgaaaatagtttatggacatgtcataa |
6987738 |
T |
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