View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_31 (Length: 299)
Name: NF16507_low_31
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 44547702 - 44547436
Alignment:
| Q |
13 |
gagatgaagcaaggaagataagattcactcttgttatttcaaaatcagataatggaggaaataacagaaaacgatgttacattaaaatgtgaaagtggat |
112 |
Q |
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| T |
44547702 |
gagatgaagcaaggaagataagattcactcttgttatttcaaaatcagataatggaggaaataacataaaacaatgttacattaaaatgtgaaagtggat |
44547603 |
T |
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| Q |
113 |
gtttatatacaaagtacaagaagttggcaaagcgtaaaattttagcgtcaataaaatgtgattgtctgtttagattgagaggtttatttgtcgaatgttg |
212 |
Q |
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| T |
44547602 |
gtttatatacaaagtacaaaaagttggcaaagcgtaaaattttagcgtcaataaaatgtgattgtctgtttagactgagacgtttatttgtcgaatgttg |
44547503 |
T |
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| Q |
213 |
gtgtatggatccttgtagttggggacaaggaacacaatcatgaaacgactctagtctttcaaggttgt |
280 |
Q |
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| T |
44547502 |
gtgtatggatccttggagttggggacaaggaacac-atcatgaaacgactctagtctatcaaggttgt |
44547436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 249
Target Start/End: Original strand, 9331054 - 9331260
Alignment:
| Q |
44 |
tgttatttcaaaatcagataatggaggaaataacagaaaacgat--gttacattaaaatgtgaaagtggatgtttatatacaaagtacaagaagttggca |
141 |
Q |
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| T |
9331054 |
tgttattggaaaatcaaataatggaggaaatggtagaaaataatttgttacattgagatgtgaaaggggaggtttctatactgagcacaataagttggca |
9331153 |
T |
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| Q |
142 |
aagcgtaaaattttagcgtcaataaaatgtgattgtctgtttagattgagaggtttatttgtcgaatgttggtgtatggatccttgtagttggggacaag |
241 |
Q |
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| T |
9331154 |
aagcgtaaaatagctggttcaatgaaacgtgattgtctgtttcgatttag-tgattatttgttgagtgttggtgactggagccttagagttgaggacaga |
9331252 |
T |
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| Q |
242 |
gaacacaa |
249 |
Q |
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| T |
9331253 |
gaacacaa |
9331260 |
T |
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