View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_42 (Length: 203)
Name: NF16507_low_42
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 3340770 - 3340597
Alignment:
| Q |
13 |
gattattctgattgtgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtagg |
112 |
Q |
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| T |
3340770 |
gattattctgatggtgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtagg |
3340671 |
T |
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| Q |
113 |
aaagtgtaagtatcattggctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgt |
186 |
Q |
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| T |
3340670 |
aaagtgtaagtatcattagctgtttcataaatttatgtgagtattttgtatcagcaaggaaaaatagaaaatgt |
3340597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 3333164 - 3333052
Alignment:
| Q |
27 |
tgatttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatc |
126 |
Q |
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| T |
3333164 |
tgattccaatacctgcatagctctctccggctatgtaaaatgctcttgttctatatgatggatacttgagaaaccaattgtgcagaaatgtgtaagcatc |
3333065 |
T |
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| Q |
127 |
attggctgtttca |
139 |
Q |
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| T |
3333064 |
attagctgtttca |
3333052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 35794417 - 35794522
Alignment:
| Q |
29 |
atttcaatacctccatagctctctcctcctatgtacaatgcccttgttctatatgaaggaaacttgaggaaccacttatgtaggaaagtgtaagtatcat |
128 |
Q |
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| T |
35794417 |
atttcaatacctgcatagctttctcctgctatgtaaaatgttttacttctatatgatgggaacttgaggaaccaattgtgtagaaaattgtaagcatcat |
35794516 |
T |
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| Q |
129 |
tggctg |
134 |
Q |
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|||||| |
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| T |
35794517 |
tggctg |
35794522 |
T |
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