View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_6 (Length: 498)
Name: NF16507_low_6
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8537638 - 8537931
Alignment:
| Q |
1 |
aactctcacgtctagtaaaaccct-agtccaccatcacccccgactccgccgccgtcgccgattccatcaaacaccgtatctccactgatggtcgttcct |
99 |
Q |
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| T |
8537638 |
aactctcaggtctagtaaaagccttaatccaccatcacccccgactccgccgccgtcgccgattccatcgaacgttgtatctccaccgatggtcattcct |
8537737 |
T |
|
| Q |
100 |
ctgaatatcgtaaatccgccgctaaattgcatgaccctttcgttcttcttccgaatttaacgatttcggataataaagttcaacgacgcagtgaaaataa |
199 |
Q |
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| T |
8537738 |
ctgaatatcgtaaatccgccgctaaatcgcatgaccctttcgttcttcttccaaatttaacgatttcggataataaacttcaacgacgcggtgaaaataa |
8537837 |
T |
|
| Q |
200 |
tggatttaatgatggtgttgtgattgttgccaaggatctgaaaaatcgacgccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
293 |
Q |
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| T |
8537838 |
tggatttaatgatggtgttgtgattgttgccaaggatctgaagaatctacgccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
8537931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 294 - 482
Target Start/End: Original strand, 8538046 - 8538234
Alignment:
| Q |
294 |
cacatcactttccaatttccattcattcaacactgtcatatttaggttcagattcactttcccttcattcacatctacactatgagattcagattcagtc |
393 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
8538046 |
cacatcactttccaatttccgttcattcaacactgtcatattcaagttcagattcactttcccttcattcacatctacactatgagattctgatttagtc |
8538145 |
T |
|
| Q |
394 |
ttgagtgaaagaattgaagcaaatcgaaaatcgcaattgctgtgttgcatagctttagagttggaaatgggagaagaggaggaagatga |
482 |
Q |
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| T |
8538146 |
tcgagagaaagaattgaagcaaatcgaaaatcgcaattgttgtgttgcatagctttagagttagaaatgggagaagacgaggaagatga |
8538234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 106 - 293
Target Start/End: Complemental strand, 37200498 - 37200311
Alignment:
| Q |
106 |
atcgtaaatccgccgctaaattgcatgaccctttcgttcttcttccgaatttaacgatttcggataataaagttcaacgacgcagtgaaaataatggatt |
205 |
Q |
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||||||||||||| ||||||| | ||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||| |
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| T |
37200498 |
atcgtaaatccgctgctaaatcgaatgacccttccgttcttcttcccaatttaacgatttcggagaataacgttcaaccgcgcggtgaaaataatggatt |
37200399 |
T |
|
| Q |
206 |
taatgatggtgttgtgattgttgccaaggatctgaaaaatcgacgccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
293 |
Q |
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| T |
37200398 |
taatgatggtgttgtcattcttgcgagggatcccaagaatcgtcgcgaaatagcgtttaatgaatatgtgaaattgataaaggaagag |
37200311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 37200672 - 37200603
Alignment:
| Q |
31 |
ccatcacccccgactccgccgccgtcgccgattccatcaaacaccgtatctccactgatggtcgttcctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||| |
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| T |
37200672 |
ccatcacccccgactccgccgccgtcgccgattccatcaaacgccgtctcgccaccgatggtcgttcctc |
37200603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 111 - 293
Target Start/End: Complemental strand, 26798345 - 26798166
Alignment:
| Q |
111 |
aaatccgccgctaaattgcatgaccctttcgttcttcttccgaatttaacgatttcggataataaagttcaacgacgcagtgaaaataatggatttaatg |
210 |
Q |
| |
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|||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| ||| | |||||||||||| |||||||||| || ||||||| |
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| T |
26798345 |
aaatccgccgctaaatcgcacgacccttttgttcttcttccgaaattaacgatttcggagaat-acgttcaacgacgcggtgaaaataacgg-tttaatg |
26798248 |
T |
|
| Q |
211 |
atggtgttgtgattgttgccaaggatctgaaaaatcgacgccatatcgcatttaatgagtatctgaaattgatgaaagaagag |
293 |
Q |
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||| |||||||||| || | | || || | | |||||||| ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
26798247 |
atgatgttgtgattctttcaagggttccg-agaatcgacgtgatatcgcttttaatgagtatgtgaaattgatgaaagaagag |
26798166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 109 - 292
Target Start/End: Original strand, 8395676 - 8395856
Alignment:
| Q |
109 |
gtaaatccgccgctaaattgcatgaccctttcgttcttcttccgaatttaacgatttcggataataaagttcaacgacgcagtgaaaataatggatttaa |
208 |
Q |
| |
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||||||||| |||||||| ||| ||||||| | ||||||||||||| |||||||||||| | ||| | |||||||||||| |||||||||| || ||||| |
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| T |
8395676 |
gtaaatccgtcgctaaatcgcacgacccttccattcttcttccgaaattaacgatttcgaagaat-acgttcaacgacgcggtgaaaataacgg-tttaa |
8395773 |
T |
|
| Q |
209 |
tgatggtgttgtgattgttgccaaggatctgaaaaatcgacgccatatcgcatttaatgagtatctgaaattgatgaaagaaga |
292 |
Q |
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||||| |||||||||| || | | || || | | |||||||| ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
8395774 |
tgatgatgttgtgattctttcaagggttccg-agaatcgacgtgatatcgcttttaatgagtatgtgaaattgatgaaagaaga |
8395856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 14210821 - 14210881
Alignment:
| Q |
422 |
aatcgcaattgctgtgttgcatagctttagagttggaaatgggagaagaggaggaagatga |
482 |
Q |
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||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
14210821 |
aatcgcaattgttgtgttgcatatctttggaattggaaatgggagaagaggaggaagatga |
14210881 |
T |
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