View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16507_low_9 (Length: 486)
Name: NF16507_low_9
Description: NF16507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16507_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Original strand, 7020985 - 7021440
Alignment:
| Q |
17 |
atttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatcaccaaaacttaa |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7020985 |
atttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttgaagaaggagatgaaatatcaccaaaacttaa |
7021084 |
T |
|
| Q |
117 |
tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7021085 |
tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgc |
7021184 |
T |
|
| Q |
217 |
agagcaaaatatgataggattctattgccagttttctaccaagtagatcctagagaagtacgacatcaagctggtgcttataaagatgcttttgttcaac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7021185 |
agagcaaaatatgataggattctattgccagttttctaccaagtagatcctacagaagtacgacatcaaactggtgcttataaagatgcttttgttcaac |
7021284 |
T |
|
| Q |
317 |
ttggacaaaattttagttccgacaaggtcgaaaagtggagagatgctttggcaaaatctgccaatatttctggatttcattcaacacattttccgtaagt |
416 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7021285 |
ttggacaaaattttagttccgacaaggtggaaaagtggagacatgctttgacaaaatctgccaatatttctggatttcattcaatacattttccgtaagt |
7021384 |
T |
|
| Q |
417 |
cttcnnnnnnnaattcataacatataaatttttagatcatttggtcccttacactt |
472 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
7021385 |
cttctttttttaattcataacatataaatttttagatcatttggacacttacactt |
7021440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 7035293 - 7035689
Alignment:
| Q |
17 |
atttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatcaccaaaacttaa |
116 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |||| || |||||||||||||| |||| || |||||| ||||||||| ||||| | |
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| T |
7035293 |
atttccttagccatgttcttgaggctttttcgcgaaagaaaattgtagtcttttctgacaagaagcttcgaggaggagacgaaatatcag---aacttca |
7035389 |
T |
|
| Q |
117 |
tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgc |
216 |
Q |
| |
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| |||||||||||||||||| ||| ||||||||||| || ||||| ||| ||| |||||||||||||||||||||||||||||||||||| || ||| |
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| T |
7035390 |
tacagcaattgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgc |
7035489 |
T |
|
| Q |
217 |
agagcaaaatatgataggattctattgccagttttctaccaagtagatcctagagaagtacgacatcaagctggtgcttataaagatgcttttgttcaac |
316 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| || ||| ||||| |||||| ||| ||||| ||||||||||| ||||| |
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| T |
7035490 |
agagcaaattatggcaggattctattgccagttttctaccaagtagagccctcagatgtacggcatcaaaatgggagttatagagatgcttttgctcaac |
7035589 |
T |
|
| Q |
317 |
ttggacaaaattttagttccgacaaggtcgaaaagtggagagatgctttggcaaaatctgccaatatttctggatttcattcaacacattttccgtaagt |
416 |
Q |
| |
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|| |||||| | || || | ||||| || |||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
7035590 |
atgaacaaaagtataatttgaataaggtgctaagttggagatatgctttgaagcaatctgccaatatgtctggatttgattcatcacattttccgtaagt |
7035689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 120 - 416
Target Start/End: Original strand, 7028691 - 7028987
Alignment:
| Q |
120 |
agcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgcaga |
219 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||||||| ||| ||| |||||||||||||||||| ||||||||||||||||| || |||||| |
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|
| T |
7028691 |
agcaattgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcaga |
7028790 |
T |
|
| Q |
220 |
gcaaaatatgataggattctattgccagttttctaccaagtagatcctagagaagtacgacatcaagctggtgcttataaagatgcttttgttcaacttg |
319 |
Q |
| |
|
||||| |||| |||| ||||| |||||||||||||||||||| |||| ||| ||||| |||||| ||| |||||| ||||||||||| ||||| || |
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| T |
7028791 |
gcaaattatggtagggttctaatgccagttttctaccaagtatatccctcagatgtacggcatcaaaatgggacttatagagatgcttttgctcaacatg |
7028890 |
T |
|
| Q |
320 |
gacaaaattttagttccgacaaggtcgaaaagtggagagatgctttggcaaaatctgccaatatttctggatttcattcaacacattttccgtaagt |
416 |
Q |
| |
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|||||| | ||||||| ||||||| || |||||| ||||||| ||||||| ||||| ||||||||| ||||| ||| |||| ||||||| |
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| T |
7028891 |
aacaaaagtatagttcctacaaggtgctaagctggagatctgctttgaagcaatctgctaatatgtctggatttgattcatcacttttttcgtaagt |
7028987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 7078635 - 7078241
Alignment:
| Q |
19 |
ttccttagccatgtccttgtggctttttcgcgaaagcaaataaatgtattttctgacaagaaacttcaagaaggagatgaaatatcaccaaaacttaatg |
118 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||| ||| ||| ||||||||||| || ||| || |||||||||| ||||| ||| || | |
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| T |
7078635 |
ttccttagccatgtcctcgaagctttgtcgcgaaagagaatcgttgttttttctgacaaaaagcttaaaacaggagatgaattatcagcaa---ttcaaa |
7078539 |
T |
|
| Q |
119 |
aagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgcag |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||| ||| ||| |||| |||||||| |||| |||||||||||||||||||| || || |
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| T |
7078538 |
gagcaattgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtag |
7078439 |
T |
|
| Q |
219 |
agcaaaatatgataggattctattgccagttttctaccaagtagatcctagagaagtacgacatcaagctggtgcttataaagatgcttttgttcaactt |
318 |
Q |
| |
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|| |||||||| |||||||||| |||||||||||||||||||||| || | || ||| | | ||| ||| ||||| ||||||||||| ||||| | |
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| T |
7078438 |
agaaaaatatggtaggattctaatgccagttttctaccaagtagagcccacagttgtaaggtaccaaaatgggatttatagagatgcttttgctcaacat |
7078339 |
T |
|
| Q |
319 |
ggacaaaattttagttccgacaaggtcgaaaagtggagagatgctttggcaaaatctgccaatatttctggatttcattcaacacattttccgtaagt |
416 |
Q |
| |
|
| |||||||| |||||| ||||||| || ||||||| ||||||| ||||||| ||||||||||||||| ||||| |||| ||| ||||||| |
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|
| T |
7078338 |
gaacaaaattatagttcttacaaggttctaaggtggagatctgctttgaagcaatctgcaaatatttctggatttgattcatcacaattttcgtaagt |
7078241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 3812004 - 3811961
Alignment:
| Q |
174 |
ttcacattggtgtttggatgagcttgtgaaaatagttgattgca |
217 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||| |||| |
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| T |
3812004 |
ttcacattggtgtttagatgagcttgtgaaaataattgagtgca |
3811961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 3821577 - 3821544
Alignment:
| Q |
174 |
ttcacattggtgtttggatgagcttgtgaaaata |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
3821577 |
ttcacattggtgtttagatgagcttgtgaaaata |
3821544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 4220872 - 4220760
Alignment:
| Q |
117 |
tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaaattttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgc |
216 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||| ||| | | | | ||||||||||||||| || || ||||| |||||| |||| ||| |
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|
| T |
4220872 |
tgaagcaattgaaggatcatccatttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgc |
4220773 |
T |
|
| Q |
217 |
agagcaaaatatg |
229 |
Q |
| |
|
|||| ||||||| |
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|
| T |
4220772 |
agagagaaatatg |
4220760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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