View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_high_11 (Length: 436)
Name: NF16508_high_11
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 429
Target Start/End: Complemental strand, 30273972 - 30273552
Alignment:
| Q |
9 |
gaaatgaaagcattgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaagatggtggatttagaagatggtacaatc |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273972 |
gaaatgaaagccttgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaagatggtggatttagaagatggtacaatc |
30273873 |
T |
|
| Q |
109 |
ctccttggtactctgaggctattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggtatgattcataaaaatcatagcacataa |
208 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273872 |
ctccctggtactctgaggctattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggtatgattcataaaaatcatagcacataa |
30273773 |
T |
|
| Q |
209 |
ttggattgaaagttttagacttacggtgcattgttaacatgattgatcttgcgtcatgtcatatatgattttagtgaaaacattagtatatggtttatgt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30273772 |
ttggattgaaagttttagacttacggtgcatagttaacatgattgatcttgcgtcatgtcatatatgattttagtgaaaacattagtatatggtttatgt |
30273673 |
T |
|
| Q |
309 |
cagttgattttgtcgtcaaacctcgtttgactagaaaagataaaatgtattggtcgagagtattcaagttcaatttctgacctaaacaatttttggttag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30273672 |
cagttgattttgtcgtcaaacctcgtttgactagaaaagataaaatgtattggtcgagagtgttcaagttcaatttctgacttaaacaatttttggttag |
30273573 |
T |
|
| Q |
409 |
attttacttacctcttggttg |
429 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30273572 |
attttacttacctcttggttg |
30273552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 25966789 - 25966626
Alignment:
| Q |
22 |
tgaatgatgattgtgaacattttgagtgttttccacctggtcatttgtactctagcaaagatggtggatttagaagatggtacaatcctccttggtactc |
121 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||| | | ||| | ||||||||||||||||| |||| | |
|
|
| T |
25966789 |
tgaatgatgaatgtgaacattttgaagtttttccacctggtcacttgtactcgagcaaagaccgggagtttcgtagatggtacaatcctccgtggttcaa |
25966690 |
T |
|
| Q |
122 |
tgaggc---tattccatcagctccttatgatcctctagctttgaggcatgcctttgagaaggta |
182 |
Q |
| |
|
||||| ||||||| || | |||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
25966689 |
cgaggctattattccaacaaccccttatgatcctctagttttgaggaatgcctttgagaaggta |
25966626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University