View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_high_18 (Length: 368)
Name: NF16508_high_18
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 5677242 - 5676876
Alignment:
| Q |
1 |
catttaacgagtgtctatgtgttagtgttgtgatgattttcatatctgtgtcggtgctccataggtagaaatctccttgtttgcaaaagaaaagaagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5677242 |
catttaacgagtgtctatgtgttagtgttgtgatgattttcatatttgtgtcggtgctccataggtagaaatctcct-gtttgcaaaagaaaagaagaac |
5677144 |
T |
|
| Q |
101 |
acaattactatgattgtagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagcattgtaacttagcttttctt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677143 |
acaattactatgattgcagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagcattgtaacttagcttttctt |
5677044 |
T |
|
| Q |
201 |
ttcttgagattcaatccttaattcttaataattttttcttttgttcgagcaggatatatttggaaagggaaggaagaaaattgaaccaagacaagagcat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5677043 |
ttcttgagattcaatccttaattcttaataattttttctttctttcgagcaggatatatttggaaagggaaggaagaagattgaaccaagacaagagcat |
5676944 |
T |
|
| Q |
301 |
gaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgcaatgtcagtaag |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5676943 |
gaaaagagggttattttagagacaatagtgagcctattaccaaaagagaagaatgcaatgtcagtaag |
5676876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University