View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_high_19 (Length: 337)
Name: NF16508_high_19
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_19 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 12870826 - 12870500
Alignment:
| Q |
1 |
accaccgagtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaagaaagatgatttgcaaatataaagtagtggtagagat |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870826 |
accaccgagtaagataaattatgacctaacagataaagaattgaagattcaattgagagaaaagaaagatgatttgcaaatataaagtagtggtagagat |
12870727 |
T |
|
| Q |
101 |
ttctaaaccctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtactcca |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12870726 |
ttctaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggg-tacctaaaattgattcaagaaattccatcccaacaatcgtactcca |
12870628 |
T |
|
| Q |
201 |
atcctcacaatttcatcaaaataaacttcaccgattttcttgagaatgttagaagttcaccgatttacaatccggtttgcataaccaaatgaacagcaag |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12870627 |
atcctcacaatttcatcaaaataaacttcaccgattttcttgagaaagttacaagttcaccgatttacaatccggtttgcataaccaaatgaacagcaag |
12870528 |
T |
|
| Q |
301 |
caagacacgacacatgaggtacttcatc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
12870527 |
caagacacgacacatgaggtacttcatc |
12870500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 27765990 - 27765663
Alignment:
| Q |
1 |
accaccgagtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaagaaagatgatttgcaaatataaagtagtggtagagat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27765990 |
accaccgagtaagataaattatgacctaacagatgaagaattgaagattcaattgagagaaaagaaagatgatttgcaaatataaagtagtagtagagat |
27765891 |
T |
|
| Q |
101 |
ttctaaaccctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtactcca |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
27765890 |
ttccaaaccctaacaaattgatagaaattagagaaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtacttca |
27765791 |
T |
|
| Q |
201 |
atcctcacaatttcatcaaaataaacttcaccgattttcttgagaatgttagaagttcaccgatttacaatccggtttgcataaccaaatgaacagcaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27765790 |
atcctcacaatttcatcaaaataaacttcaccgattttcttaagaaagttataagttcacctatttacaatccggtttgcataaccaaatgaacagcaag |
27765691 |
T |
|
| Q |
301 |
caagacacgacacatgaggtacttcatc |
328 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
27765690 |
caagacacgacacgtgaggtacttcatc |
27765663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 8 - 209
Target Start/End: Original strand, 31770319 - 31770520
Alignment:
| Q |
8 |
agtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtggtagagatttctaa |
106 |
Q |
| |
|
|||||||||| || |||||||| ||| || | ||||| |||||||||||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||| |
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|
| T |
31770319 |
agtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaa |
31770418 |
T |
|
| Q |
107 |
accctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtactccaatcctc |
206 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||| || | |||||||||| |||| ||| | |||| ||| ||||||||||||||||||||| |
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|
| T |
31770419 |
accttaacaaattgatagaaattagagaaaaatagtgagag-agtgagtacctaaaactgatgcaaaatattcaatctgaaccatcgtactccaatcctc |
31770517 |
T |
|
| Q |
207 |
aca |
209 |
Q |
| |
|
||| |
|
|
| T |
31770518 |
aca |
31770520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 7607759 - 7607899
Alignment:
| Q |
8 |
agtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtggtagagatttctaa |
106 |
Q |
| |
|
|||||||||| ||||||||||| ||| || | ||||| |||||||||||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||| |
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|
| T |
7607759 |
agtaagataaattatgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaa |
7607858 |
T |
|
| Q |
107 |
accctaacaaattgatagaaattagaggaaaatagtgagag |
147 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7607859 |
accttaacaaattgatagaaattagagaaaaatagtgagag |
7607899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 14185033 - 14184934
Alignment:
| Q |
8 |
agtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaa-gaaagatgatttgcaaatataaagtagtggtagagatttctaa |
106 |
Q |
| |
|
|||||||||| || |||||||| ||| || | ||||| |||||||||||||||||| |||| ||| |||||||| ||||||| ||||||||||||||||| |
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|
| T |
14185033 |
agtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaaatgttttgcaaagataaagtggtggtagagatttctaa |
14184934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 28708 - 28513
Alignment:
| Q |
8 |
agtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaagaaagatgatttgcaaatataaagtagtggtagagatttctaaa |
107 |
Q |
| |
|
||||||||| || |||||||| ||| || | ||||| |||||||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||| |
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|
| T |
28708 |
agtaagatagattctgacctaatagaagaggtattgaagattcaattgagagaaaaagaaaatgttttgcaaagataaagtggtggtagagatttctaaa |
28609 |
T |
|
| Q |
108 |
ccctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtactccaatcct |
205 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||| ||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
28608 |
ccttaacaaattgatagaaattagagaaaaatagtgagag-agggagtacctaaaactgatacaaaatattccatctgaaccat-gtactccaatcct |
28513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 12537874 - 12538069
Alignment:
| Q |
8 |
agtaagataagttatgacctaacagatgaagaattgaggattcaattgagagaaaagaaagatgatttgcaaatataaagtagtggtagagatttctaaa |
107 |
Q |
| |
|
|||||||||| || |||||||| ||| || | ||||| |||||||||||||||||| ||| ||| |||||||| ||||||| ||||| |||||||||||| |
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|
| T |
12537874 |
agtaagataaattctgacctaatagaagaggtattgaagattcaattgagagaaaaaaaaaatgttttgcaaagataaagttgtggtggagatttctaaa |
12537973 |
T |
|
| Q |
108 |
ccctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaaattgattcaagaaattccatcccaaccatcgtactccaatcct |
205 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||| | || |||||||||| |||| ||| | |||||||| |||||| ||||||||||||| |
|
|
| T |
12537974 |
ccttaacaaattgatagaaattagagaaaaatagtgagag-atggagtacctaaaactgatacaaaatattccatctaaaccat-gtactccaatcct |
12538069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 41810939 - 41810794
Alignment:
| Q |
63 |
agaaagatgatttgcaaatataaagtagtggtagagatttctaaaccctaacaaattgatagaaattagaggaaaatagtgagagaagggggtacctaaa |
162 |
Q |
| |
|
||||| ||| |||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || | ||||||||| |
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|
| T |
41810939 |
agaaaaatgttttgcaaagataaagtggtgttagagatttctaaaccttaacaaattgatagaaattagagaaaaatagtgagag-agtgagtacctaaa |
41810841 |
T |
|
| Q |
163 |
attgattcaagaaattccatcccaaccatcgtactccaatcctcaca |
209 |
Q |
| |
|
| |||| ||| | |||| ||| |||||||||||||||||||||||| |
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|
| T |
41810840 |
actgatgcaaaatattcaatctgaaccatcgtactccaatcctcaca |
41810794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 6666722 - 6666784
Alignment:
| Q |
76 |
gcaaatataaagtagtggtagagatttctaaaccctaacaaattgatagaaattagaggaaaa |
138 |
Q |
| |
|
||||| ||||| | || |||||||||| |||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6666722 |
gcaaagataaattggtagtagagatttgtaaaccctaataaattgatagaaatgagaggaaaa |
6666784 |
T |
|
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