View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_high_24 (Length: 297)

Name: NF16508_high_24
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_high_24
NF16508_high_24
[»] chr4 (1 HSPs)
chr4 (13-297)||(41537961-41538245)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 41538245 - 41537961
Alignment:
Q  13 gagaagaagcgtgtagaaatcatagttaggttgatcgtttgacacggggggttttgtggcggagacaaatggaatcgaagaagtccaattttctaaccta 112  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41538245 gagaagaagcgtgtagaaatcatagttaggtctatcgtttgacacggggggttttgtggcggagacaaatggaatcgaagaagtccaattttctaaccta 41538146  T
Q  113 gatttcgcagcggtggtgattttaacggaagattgatcggaatttgttggattgacggaattacccttggaaacggggtaataagcgaaccagaaaaaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41538145 gatttcgcagcggtggtgattttaacggaagattgatcggaatttgttggattgacggaattacccttggagacggggtaataagcgaaccagaaaaaga 41538046  T
Q  213 agtattgaaaaacattgagttgaatttgtgaagaggaagatgaagatgggaagactgatggcagaagatcggagagattgtgttt 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41538045 agtattgaaaaacattgagttgaatttgtgaagaggaagatgaagatgggaagactgatggaagaagatcggagagattgtgttt 41537961  T

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