View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_high_27 (Length: 291)
Name: NF16508_high_27
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 32506989 - 32506729
Alignment:
| Q |
10 |
agatgaagaaggtgacacattattatgagatttccttgaacctacaagcctaggcaaaatggtaaaaaatatgttgttgacttttgaatttcttctctta |
109 |
Q |
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| T |
32506989 |
agatgaagaaggtgacacattat---gagatttccttgaacctacaagcctaggcaaaatggtaaaaaatatgttgttgacttttgaatttcttctctta |
32506893 |
T |
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| Q |
110 |
ccattggacttgtaattagtactagaatatgaaggtggaggtgtgagaggaggcagagaagtttctgacaaaggatgtttaggtgttcctggttgtgctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32506892 |
ccattggacttgtaattagtactagaatatgaaggtggaggtgtgagaggaggcagagaagtttctgacaaaggatgtttaggtgttcctggttgtgcct |
32506793 |
T |
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| Q |
210 |
cccacatgaaaggaacagcaacagatgtttcaccataatagaacactctccttgaagatgagtt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32506792 |
cccacatgaaaggaacagcaacagatgtttcaccataatagaaaactctccttgaagatgagtt |
32506729 |
T |
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