View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_high_28 (Length: 290)

Name: NF16508_high_28
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_high_28
NF16508_high_28
[»] chr7 (9 HSPs)
chr7 (87-146)||(30107596-30107655)
chr7 (26-61)||(30107545-30107580)
chr7 (258-290)||(8459617-8459649)
chr7 (258-290)||(48314397-48314429)
chr7 (258-290)||(28109960-28109992)
chr7 (258-290)||(39875834-39875866)
chr7 (258-290)||(48395251-48395283)
chr7 (258-290)||(49069252-49069284)
chr7 (203-239)||(49094667-49094703)
[»] chr8 (13 HSPs)
chr8 (258-290)||(3155846-3155878)
chr8 (258-290)||(21526317-21526349)
chr8 (258-290)||(43066630-43066662)
chr8 (251-290)||(5740803-5740842)
chr8 (258-290)||(895937-895969)
chr8 (258-290)||(1370310-1370342)
chr8 (258-290)||(7678735-7678767)
chr8 (258-290)||(9047095-9047127)
chr8 (258-290)||(12659055-12659087)
chr8 (258-290)||(26629146-26629178)
chr8 (258-290)||(30170765-30170797)
chr8 (258-290)||(30943875-30943907)
chr8 (258-290)||(40102026-40102058)
[»] chr4 (11 HSPs)
chr4 (258-290)||(19899313-19899345)
chr4 (258-290)||(53190929-53190961)
chr4 (258-289)||(54222093-54222124)
chr4 (261-290)||(35908419-35908448)
chr4 (258-290)||(25725730-25725762)
chr4 (258-290)||(35824142-35824174)
chr4 (258-290)||(42490923-42490955)
chr4 (258-290)||(48494937-48494969)
chr4 (258-290)||(50831792-50831824)
chr4 (258-290)||(51389110-51389142)
chr4 (258-290)||(56215608-56215640)
[»] chr3 (8 HSPs)
chr3 (258-290)||(11323912-11323944)
chr3 (258-290)||(32457791-32457823)
chr3 (258-290)||(34271526-34271558)
chr3 (258-290)||(34628106-34628138)
chr3 (246-290)||(36907051-36907095)
chr3 (211-239)||(38910538-38910566)
chr3 (258-290)||(48649583-48649615)
chr3 (258-290)||(52963352-52963384)
[»] chr2 (12 HSPs)
chr2 (258-290)||(43665625-43665657)
chr2 (258-290)||(44422981-44423013)
chr2 (258-290)||(1052532-1052564)
chr2 (258-290)||(4036912-4036944)
chr2 (203-239)||(14151693-14151729)
chr2 (258-290)||(24727626-24727658)
chr2 (258-290)||(25507258-25507290)
chr2 (258-290)||(32750001-32750033)
chr2 (258-290)||(40602426-40602458)
chr2 (258-290)||(40874297-40874329)
chr2 (258-290)||(43057067-43057099)
chr2 (258-290)||(45376257-45376289)
[»] chr1 (13 HSPs)
chr1 (258-290)||(14983787-14983819)
chr1 (258-290)||(51231342-51231374)
chr1 (260-290)||(15283067-15283097)
chr1 (248-290)||(47059905-47059947)
chr1 (244-290)||(29264018-29264066)
chr1 (258-290)||(19330914-19330946)
chr1 (258-290)||(25098824-25098856)
chr1 (258-290)||(25989020-25989052)
chr1 (258-290)||(33694237-33694269)
chr1 (258-290)||(45272185-45272217)
chr1 (258-290)||(49020440-49020472)
chr1 (258-290)||(51339736-51339768)
chr1 (258-290)||(51571418-51571450)
[»] chr6 (9 HSPs)
chr6 (251-290)||(31517198-31517237)
chr6 (258-290)||(3552190-3552222)
chr6 (258-290)||(8778908-8778940)
chr6 (258-290)||(9188980-9189012)
chr6 (203-239)||(10840822-10840858)
chr6 (258-290)||(13093629-13093661)
chr6 (258-290)||(20029264-20029296)
chr6 (258-290)||(26391321-26391353)
chr6 (258-290)||(31883340-31883372)
[»] scaffold0115 (1 HSPs)
scaffold0115 (258-290)||(15224-15256)
[»] scaffold0009 (1 HSPs)
scaffold0009 (258-290)||(263731-263763)
[»] chr5 (5 HSPs)
chr5 (258-290)||(1293122-1293154)
chr5 (258-290)||(8728617-8728649)
chr5 (258-290)||(11306701-11306733)
chr5 (258-290)||(41621964-41621996)
chr5 (258-290)||(43057438-43057470)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 30107596 - 30107655
Alignment:
Q  87 cgcgaatgccatacgtgaacagcagtgcgtttgtggatgatgaagctacgcacatttatt 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30107596 cgcgaatgccatacgtgaacagcagtgcgtttgtggatgatgaagctacgcacatttatt 30107655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 30107545 - 30107580
Alignment:
Q  26 aaaacagaggaagattgcatccatggaagcaagcag 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  30107545 aaaacagaggaagattgcatccatggaagcaagcag 30107580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 8459649 - 8459617
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  8459649 agttgttaaaaagtggttgtacaaatatcattt 8459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 48314397 - 48314429
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  48314397 agttgttaaaaagtggttgtacaaatatcattt 48314429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 28109992 - 28109960
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  28109992 agttgtcaaaaagtggttgtacaaatatcattt 28109960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 39875834 - 39875866
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||||||||| |||||||||||    
T  39875834 agttgttaaaaagtggttgtataaatatcattt 39875866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 48395283 - 48395251
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  48395283 agttgtcaaaaagtggttgtacaaatatcattt 48395251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 49069284 - 49069252
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  49069284 agttgtcaaaaagtggttgtacaaatatcattt 49069252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 49094667 - 49094703
Alignment:
Q  203 acaacaacttttcctctattcttattggataaaaaca 239  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  49094667 acaaccacttttcctcttttcttattggataaaaaca 49094703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 3155878 - 3155846
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  3155878 agttgttaaaaagtggttgtacaaatatcattt 3155846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 21526317 - 21526349
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  21526317 agttgttaaaaagtggttgtacaaatatcattt 21526349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 43066630 - 43066662
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  43066630 agttgttaaaaagtggttgtacaaatatcattt 43066662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 5740803 - 5740842
Alignment:
Q  251 gagaaagagttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  5740803 gagaaaaagttgtcaaaaagtggttgtacaaatatcattt 5740842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 895969 - 895937
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  895969 agttgtcaaaaagtggttgtacaaatatcattt 895937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 1370310 - 1370342
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  1370310 agttgttacaaagtggttgtacaaatatcattt 1370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 7678767 - 7678735
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  7678767 agttgtcaaaaagtggttgtacaaatatcattt 7678735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 9047095 - 9047127
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  9047095 agttgtcaaaaagtggttgtacaaatatcattt 9047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 12659087 - 12659055
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  12659087 agttgttaaaaattggttgtacaaatatcattt 12659055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 26629146 - 26629178
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  26629146 agttgtcaaaaagtggttgtacaaatatcattt 26629178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 30170765 - 30170797
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  30170765 agttgtcaaaaagtggttgtacaaatatcattt 30170797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 30943875 - 30943907
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  30943875 agttgttaaaaattggttgtacaaatatcattt 30943907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 40102058 - 40102026
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  40102058 agttgtgaaaaagtggttgtacaaatatcattt 40102026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 19899345 - 19899313
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  19899345 agttgttaaaaagtggttgtacaaatatcattt 19899313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 53190961 - 53190929
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  53190961 agttgttaaaaagtggttgtacaaatatcattt 53190929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 289
Target Start/End: Original strand, 54222093 - 54222124
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcatt 289  Q
    ||||||||||||||||||||||||||||||||    
T  54222093 agttgttaaaaagtggttgtacaaatatcatt 54222124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 290
Target Start/End: Complemental strand, 35908448 - 35908419
Alignment:
Q  261 tgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||||||||||||||||||    
T  35908448 tgttaaaaagtggttgtacaaatatcattt 35908419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 25725730 - 25725762
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  25725730 agttgttagaaagtggttgtacaaatatcattt 25725762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 35824142 - 35824174
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  35824142 agttgttaaaaaatggttgtacaaatatcattt 35824174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 42490955 - 42490923
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  42490955 agttgtcaaaaagtggttgtacaaatatcattt 42490923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 48494937 - 48494969
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||| ||||||||||||    
T  48494937 agttgttaaaaagtggttgttcaaatatcattt 48494969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 50831792 - 50831824
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  50831792 agttgtcaaaaagtggttgtacaaatatcattt 50831824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 51389110 - 51389142
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  51389110 agttgttacaaagtggttgtacaaatatcattt 51389142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 56215640 - 56215608
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  56215640 agttgtcaaaaagtggttgtacaaatatcattt 56215608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 11323944 - 11323912
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  11323944 agttgttaaaaagtggttgtacaaatatcattt 11323912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 32457791 - 32457823
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  32457791 agttgtcaaaaagtggttgtacaaatatcattt 32457823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 34271526 - 34271558
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  34271526 agttgttacaaagtggttgtacaaatatcattt 34271558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 34628106 - 34628138
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  34628106 agttgttaaaaaatggttgtacaaatatcattt 34628138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 36907095 - 36907051
Alignment:
Q  246 agtatgagaaagagttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||| |||||||| ||| |||||||| |||||||||||    
T  36907095 agtatgagaaaaagttgttataaaatggttgtataaatatcattt 36907051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 38910538 - 38910566
Alignment:
Q  211 ttttcctctattcttattggataaaaaca 239  Q
    |||||||||||||||||||||||||||||    
T  38910538 ttttcctctattcttattggataaaaaca 38910566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 48649615 - 48649583
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  48649615 agttgttagaaagtggttgtacaaatatcattt 48649583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 52963352 - 52963384
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  52963352 agttgttaaaaaatggttgtacaaatatcattt 52963384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43665657 - 43665625
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  43665657 agttgttaaaaagtggttgtacaaatatcattt 43665625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 44423013 - 44422981
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  44423013 agttgttaaaaagtggttgtacaaatatcattt 44422981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 1052532 - 1052564
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  1052532 agttgttaaaaaatggttgtacaaatatcattt 1052564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 4036912 - 4036944
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||| ||||||||||||||||||    
T  4036912 agttgttaaaaagtagttgtacaaatatcattt 4036944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 14151693 - 14151729
Alignment:
Q  203 acaacaacttttcctctattcttattggataaaaaca 239  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  14151693 acaaccacttttcctctcttcttattggataaaaaca 14151729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 24727626 - 24727658
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  24727626 agttgtcaaaaagtggttgtacaaatatcattt 24727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 25507290 - 25507258
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  25507290 agttgtcaaaaagtggttgtacaaatatcattt 25507258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 32750033 - 32750001
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  32750033 agttgtgaaaaagtggttgtacaaatatcattt 32750001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 40602426 - 40602458
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  40602426 agttgtcaaaaagtggttgtacaaatatcattt 40602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 40874297 - 40874329
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  40874297 agttgttaaaaaatggttgtacaaatatcattt 40874329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43057099 - 43057067
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||| ||||||||||||    
T  43057099 agttgttaaaaagtggttgttcaaatatcattt 43057067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 45376257 - 45376289
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  45376257 agttgtcaaaaagtggttgtacaaatatcattt 45376289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 14983819 - 14983787
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  14983819 agttgttaaaaagtggttgtacaaatatcattt 14983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 51231342 - 51231374
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||||    
T  51231342 agttgttaaaaagtggttgtacaaatatcattt 51231374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 290
Target Start/End: Original strand, 15283067 - 15283097
Alignment:
Q  260 ttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||||||||||||||||||    
T  15283067 ttgttaaaaagtggttgtacaaatatcattt 15283097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 47059905 - 47059947
Alignment:
Q  248 tatgagaaagagttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||| | |||||||||||| ||||||||||||||||||||    
T  47059905 tatgagataaagttgttaaaaaatggttgtacaaatatcattt 47059947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 29264066 - 29264018
Alignment:
Q  244 taagtatgagaaaga--gttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  29264066 taagtatgagaaagaaagttgtcataaagtggttgtacaaatatcattt 29264018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 19330914 - 19330946
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||| |||||||||||||||||||||||||||    
T  19330914 agttggtaaaaagtggttgtacaaatatcattt 19330946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 25098824 - 25098856
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  25098824 agttgttacaaagtggttgtacaaatatcattt 25098856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 25989020 - 25989052
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  25989020 agttgttaaaaaatggttgtacaaatatcattt 25989052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 33694237 - 33694269
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||| |||||||||||||||||    
T  33694237 agttgttaaaaagtgattgtacaaatatcattt 33694269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 45272185 - 45272217
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  45272185 agttgtcaaaaagtggttgtacaaatatcattt 45272217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 49020440 - 49020472
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  49020440 agttgttaaaaaatggttgtacaaatatcattt 49020472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 51339736 - 51339768
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  51339736 agttgttacaaagtggttgtacaaatatcattt 51339768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 51571450 - 51571418
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  51571450 agttgtcaaaaagtggttgtacaaatatcattt 51571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 290
Target Start/End: Original strand, 31517198 - 31517237
Alignment:
Q  251 gagaaagagttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  31517198 gagaaaaagttgtcaaaaagtggttgtacaaatatcattt 31517237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 3552190 - 3552222
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  3552190 agttgttaaaaaatggttgtacaaatatcattt 3552222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 8778908 - 8778940
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  8778908 agttgttaaaaaatggttgtacaaatatcattt 8778940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 9188980 - 9189012
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  9188980 agttgttaaaaaatggttgtacaaatatcattt 9189012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 10840858 - 10840822
Alignment:
Q  203 acaacaacttttcctctattcttattggataaaaaca 239  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  10840858 acaaccactttttctctattcttattggataaaaaca 10840822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 13093661 - 13093629
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  13093661 agttgtcaaaaagtggttgtacaaatatcattt 13093629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 20029296 - 20029264
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||||||||| |||||||||||    
T  20029296 agttgttaaaaagtggttgtataaatatcattt 20029264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 26391321 - 26391353
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  26391321 agttgttaaaaaatggttgtacaaatatcattt 26391353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 31883340 - 31883372
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  31883340 agttgtcaaaaagtggttgtacaaatatcattt 31883372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 15224 - 15256
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||| |||||||||||||||||    
T  15224 agttgttaaaaagtgattgtacaaatatcattt 15256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 263731 - 263763
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||| ||||||||||||||||||||||||    
T  263731 agttgttagaaagtggttgtacaaatatcattt 263763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 1293122 - 1293154
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||||||||| ||||||||||||||||||||    
T  1293122 agttgttaaaaaatggttgtacaaatatcattt 1293154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 8728617 - 8728649
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  8728617 agttgtcaaaaagtggttgtacaaatatcattt 8728649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 11306733 - 11306701
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    ||||||||||||||| |||||||||||||||||    
T  11306733 agttgttaaaaagtgattgtacaaatatcattt 11306701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 41621964 - 41621996
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  41621964 agttgtcaaaaagtggttgtacaaatatcattt 41621996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43057470 - 43057438
Alignment:
Q  258 agttgttaaaaagtggttgtacaaatatcattt 290  Q
    |||||| ||||||||||||||||||||||||||    
T  43057470 agttgtcaaaaagtggttgtacaaatatcattt 43057438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University