View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_high_3 (Length: 689)

Name: NF16508_high_3
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_high_3
NF16508_high_3
[»] chr2 (40 HSPs)
chr2 (17-669)||(39473159-39473816)
chr2 (52-645)||(39458944-39459505)
chr2 (203-669)||(39152406-39152852)
chr2 (82-249)||(39421965-39422132)
chr2 (108-424)||(39215359-39215675)
chr2 (292-542)||(39414664-39414914)
chr2 (238-542)||(39397731-39398035)
chr2 (311-549)||(39421707-39421945)
chr2 (78-215)||(39415033-39415170)
chr2 (57-323)||(39137516-39137782)
chr2 (258-551)||(39137759-39138040)
chr2 (311-551)||(39381384-39381624)
chr2 (121-278)||(39414886-39415043)
chr2 (21-151)||(39152266-39152396)
chr2 (57-227)||(39487689-39487859)
chr2 (249-424)||(39192440-39192615)
chr2 (249-424)||(39198120-39198295)
chr2 (87-551)||(39369835-39370278)
chr2 (90-196)||(44614607-44614713)
chr2 (238-421)||(39468196-39468379)
chr2 (259-424)||(39222763-39222928)
chr2 (259-452)||(39389109-39389302)
chr2 (259-471)||(39161720-39161932)
chr2 (259-471)||(39207262-39207474)
chr2 (630-667)||(39380891-39380928)
chr2 (500-547)||(39389035-39389082)
chr2 (500-550)||(39161940-39161990)
chr2 (500-550)||(39207204-39207254)
chr2 (156-254)||(39381639-39381737)
chr2 (116-194)||(39389346-39389424)
chr2 (500-548)||(39222941-39222989)
chr2 (637-667)||(39196925-39196955)
chr2 (311-345)||(39487655-39487689)
chr2 (315-368)||(39124615-39124668)
chr2 (121-182)||(39130365-39130426)
chr2 (226-278)||(2361524-2361576)
chr2 (508-548)||(39192379-39192419)
chr2 (508-548)||(39198059-39198099)
chr2 (523-551)||(39215750-39215778)
chr2 (78-142)||(39451794-39451858)
[»] chr6 (1 HSPs)
chr6 (238-551)||(16113156-16113469)
[»] chr7 (2 HSPs)
chr7 (258-551)||(19807709-19807990)
chr7 (57-323)||(19807466-19807732)
[»] chr5 (1 HSPs)
chr5 (100-193)||(33560754-33560847)
[»] chr8 (2 HSPs)
chr8 (105-196)||(44951214-44951305)
chr8 (630-662)||(45342748-45342780)
[»] scaffold0250 (1 HSPs)
scaffold0250 (132-196)||(4257-4321)
[»] chr3 (1 HSPs)
chr3 (90-142)||(51574944-51574996)


Alignment Details
Target: chr2 (Bit Score: 614; Significance: 0; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 17 - 669
Target Start/End: Complemental strand, 39473816 - 39473159
Alignment:
Q  17 gaagcaacttgatgtcagagtgaaagggttagaaccaaaggagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagc 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39473816 gaagcaacttgatgtcagagtgaaggggttagaaccaaaggagggtgaacttgaagggtgggtgaagaagccggaatcagaaaagaagcatttcgagagc 39473717  T
Q  117 caactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagttta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473716 caactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagttta 39473617  T
Q  217 aaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473616 aaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaataaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagca 39473517  T
Q  317 atttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39473516 atttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtc 39473417  T
Q  417 gaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgagg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473416 gaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgagg 39473317  T
Q  517 aaatagaatcgggtaaatgttcttattcatctagtattcatttagcatattgaaaatttcattcaatcatttctgttaataatgttgatattttttataa 616  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39473316 aaatagaatcgggtaaatgttcttattcatctggtattcatttagcatattgaaaatttcattcaaccatttctgttaataatgttgatattttttataa 39473217  T
Q  617 cctgatc-----tacatctatgagggagcttaaatatctgctatctaaatatgcagct 669  Q
    |||||||     ||||||||||||||||||||||||||||||||||||||||||||||    
T  39473216 cctgatctgcattacatctatgagggagcttaaatatctgctatctaaatatgcagct 39473159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 52 - 645
Target Start/End: Original strand, 39458944 - 39459505
Alignment:
Q  52 caaaggagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatt 151  Q
    |||| |||| |||| |||||||  |||||||| || |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||    
T  39458944 caaaagaggatgaatttgaaggccgggtgaaggagttggaatcagaaaagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatt 39459043  T
Q  152 taatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaag 251  Q
    | | |||||||||||||||||                     |||  |||||| |||||||||| || | || ||||||||||||||||||| |||||||    
T  39459044 tgaaggacaagtgaaggagtt---------------------taaaggtcaagggaaggagtttgaatcaaataaggaggaattcaaaggtcaggttaag 39459122  T
Q  252 gagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaag 351  Q
     |||| || |||||||||||||||||| ||| | || ||||||| ||||||| || || |||||||||||||||||   |||||||| ||||  |  |||    
T  39459123 cagctcaattcaaaaaagaagcaatttgaaagccagtttgaggacttcaaattaaaagagaagcaatttgaagaacagcggaaagaattcgatgctgaag 39459222  T
Q  352 agaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatgg 451  Q
    ||||||||||||||||| |||||||    |||||||||||||| |||||  |||||||| ||||| ||||||| ||||||||||| |||||   ||||||    
T  39459223 agaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatccagagtcaaagcttaataattttgatgg 39459322  T
Q  452 aacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctagt 551  Q
    |  |  |||||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||||| |||||||||||| ||||||           |    
T  39459323 acaagtgaaggagcctgagttgacagtgaaacaatatgaaccattaatgaactattttgatgaggaaacagaatcgggtaagtgttct-----------t 39459411  T
Q  552 attcatttagcatattgaaaatttca-ttcaatcatttctgttaataatgttgatattttttataacctgatctacatctatgagggagcttaaa 645  Q
    ||||||||||| |||||||||||||| |||||  |||||  ||||| ||| || |||||||||||||||||||||||  ||||||||||||||||    
T  39459412 attcatttagcttattgaaaatttcatttcaacaatttcatttaatgatg-tgttattttttataacctgatctacacatatgagggagcttaaa 39459505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 203 - 669
Target Start/End: Original strand, 39152406 - 39152852
Alignment:
Q  203 agtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaa 302  Q
    ||||||| |||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| | |||||||||| ||||||    
T  39152406 agtgaagaagtttaaaaaagggaaggaggaattcaaaggtcaggttaaggagcttaaatcaaaaaagaagaaatttgaaatccaggttgaggacttcaaa 39152505  T
Q  303 tcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcagg 402  Q
     ||| || ||||||||||||| |||| |||||||| ||||||||||||||||||||  || |       ||||||   |||||||||||||||||||||     
T  39152506 acaaaagagaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaataa--tcca-------gtgaaggagctcaagttaaaagagaagcagc 39152596  T
Q  403 ttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaa 502  Q
    |||||| ||||| | ||||||  |||||||||||||||||||||||||||    ||||||||| ||| ||||||||||||| ||||| ||||||||||||    
T  39152597 ttgaagtagaagccaaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaacaatatggaccattaataaa 39152696  T
Q  503 atattttgatgaggaaatagaatcgggtaaatgttcttattcatctagtattcatttagcatattgaaaatttcattcaatcatttctgttaataatgtt 602  Q
    |||||||||||||||||||||||| |||||||||| |||||  ||||||            ||||||||||    ||||| ||||||| ||||| |||||    
T  39152697 atattttgatgaggaaatagaatcaggtaaatgtttttatttgtctagt-----------ttattgaaaatcatgttcaaccatttcttttaatgatgtt 39152785  T
Q  603 gatattttttataacctgatctacatctatgagggagcttaaatatctgctatctaaatatgcagct 669  Q
    |||   ||| ||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||    
T  39152786 gattactttaataacctgatcaacatgtatgagagagcttaaatatctgatatctaaatatgcagct 39152852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 39422132 - 39421965
Alignment:
Q  82 agaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaa 181  Q
    |||||||||||||||||||||||||||| || |||| ||||||||| |||||||||| ||||||||||||  |||||||| |||||||||||| ||||||    
T  39422132 agaagctggaatcagaaaagaagcattttgaaagccgactgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaa 39422033  T
Q  182 agaggaggaatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggtta 249  Q
    |||||||||||||||| || || |||||||||||||| | ||| ||||| |||||||||||| |||||    
T  39422032 agaggaggaatttaacggtaaattgaaggagtttaaatcaaaggaggagcaattcaaaggtcaggtta 39421965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 108 - 424
Target Start/End: Original strand, 39215359 - 39215675
Alignment:
Q  108 ttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtga 207  Q
    |||||||| ||| ||||| | |||||| | ||||||||| ||||  | | ||||  ||||||||||||||||||| |||||||||||||  ||||||||     
T  39215359 ttcgagagacaattgaagaatctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaaacaggaggaatttaaaggtcaagtgg 39215458  T
Q  208 aggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaat 307  Q
    ||||| || || | ||  |||||||||||||||| |||||||||||||| |  | |||||||||||||||| |||   | ||||||   ||  ||||||     
T  39215459 aggagcttgaatcaaatgaggaggaattcaaaggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagacaagttgagagctttgaatcaaa 39215558  T
Q  308 agcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaa 407  Q
    || |||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||   || |||    |||||||||||||||||||| ||| |    
T  39215559 agagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttgga 39215658  T
Q  408 ggagaagtcgaggatcc 424  Q
    ||| ||||| |||||||    
T  39215659 ggacaagtcaaggatcc 39215675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 292 - 542
Target Start/End: Complemental strand, 39414914 - 39414664
Alignment:
Q  292 aggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaa 391  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||||||| || |||| ||||||||||||||| || | || ||    |||||||||||    
T  39414914 aggaactcaaatcaaaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaa 39414815  T
Q  392 agagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccg-aaggagcctgagttgacagagaaacgatatga 490  Q
     ||||| ||| |||||||| ||||  ||||||| |||||||||||  | |||  ||||||| ||||| |||||| ||||||||| ||| |||| ||||||    
T  39414814 tgagaaacagtttgaaggacaagttaaggatcctgagtcaaagctggaaaaatttgatgga-caccggaaggagtctgagttgagagaaaaacaatatga 39414716  T
Q  491 accattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttat 542  Q
    ||| ||||||||| |||||||||||| ||   ||||||||||||||||||||    
T  39414715 accgttaataaaagattttgatgagggaagcaaatcgggtaaatgttcttat 39414664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 238 - 542
Target Start/End: Complemental strand, 39398035 - 39397731
Alignment:
Q  238 aaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaaga 337  Q
    ||||||| |||||||||||  ||| | |||| ||||| ||| ||| | | |||||||| |||||||||| ||  |||||| |||||||||| |||||| |    
T  39398035 aaggtcgagttaaggagctcgaattacaaaataagcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaagaacggtggaaaaa 39397936  T
Q  338 actcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagcta 437  Q
    ||| ||||||||||||||| ||||||||||||  ||| ||   ||  ||||||||||||||||||||| |||   |||| |||| |  ||||||| |||     
T  39397935 acttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtcgagtcaaggaacttgagtcaaggctg 39397836  T
Q  438 aataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgtt 537  Q
     |||||  |||||||  || |||||||||||||||||||| ||||| ||||||| | |||| ||||||| |  ||||||||| ||||||||||||| |||    
T  39397835 gataaatttgatggacaactgaaggagcctgagttgacagggaaacaatatgaagcgttaaaaaaatatatcaatgaggaaaaagaatcgggtaaaggtt 39397736  T
Q  538 cttat 542  Q
    |||||    
T  39397735 cttat 39397731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 311 - 549
Target Start/End: Complemental strand, 39421945 - 39421707
Alignment:
Q  311 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaagga 410  Q
    |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||    ||||| |||||||| ||||   ||| || |    
T  39421945 gaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggagca 39421846  T
Q  411 gaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttg 510  Q
      |||| ||||||||||||| |||||||||||    |||| |  || ||||||||||||||||||||||||||  ||||    | ||  | |||||||||    
T  39421845 ctagtcaaggatcccgagtcgaagctaaataagttagatgaacaactgaaggagcctgagttgacagagaaacagtatgctttaatagaagaatattttg 39421746  T
Q  511 atgaggaaatagaatcgggtaaatgttcttattcatcta 549  Q
    |||||||||  ||||| ||||||||||||||||||||||    
T  39421745 atgaggaaaatgaatctggtaaatgttcttattcatcta 39421707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 39415170 - 39415033
Alignment:
Q  78 gtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagt 177  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||| || | || | |||| ||||||||||    
T  39415170 gtgaaggagctggaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaaagaaaatcaattcaaagaacgaatgaaagagttccagt 39415071  T
Q  178 caaaagaggaggaatttaacagtcaagtgaaggagttt 215  Q
    |||||||||||||| | ||  | |||||||||||||||    
T  39415070 caaaagaggaggaactcaaaggacaagtgaaggagttt 39415033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 39137516 - 39137782
Alignment:
Q  57 gagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatg 156  Q
    |||| |||| |||||||  |||||||| | || ||||| |||||||||||||| ||||||| || |||| |||| ||| || |||||||| ||| | | |    
T  39137516 gaggatgaatttgaaggcagggtgaaggaactcgaatctgaaaagaagcattttgagagccgacagaagcagcttgaaacacaagaaaagcaatatgaag 39137615  T
Q  157 gacaagtgaaggagttccagtcaaaagaggaggaatttaacagt-caagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagc 255  Q
     |||| |||||||||||||||||||||| |||||||| || ||| || |||||||| ||| || | ||| | ||||| ||| ||| ||  ||||||||||    
T  39137616 aacaaatgaaggagttccagtcaaaagaagaggaattcaa-agtacacgtgaaggattttgaatcaaaggatgaggagttcgaagatcaagttaaggagc 39137714  T
Q  256 ttaaatcaaaaaagaagcaatt-taaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaa 323  Q
    | ||||||||||||||||||||  |||||||| |||||||| |||||||||| || ||||||| |||||    
T  39137715 tcaaatcaaaaaagaagcaattcgaaaaccaa-gttgaggatttcaaatcaaaagagaagcaacttgaa 39137782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 258 - 551
Target Start/End: Original strand, 39137759 - 39138040
Alignment:
Q  258 aaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaata 357  Q
    ||||||||| |||||||| || ||| | | || ||||| | |||||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  39137759 aaatcaaaagagaagcaacttgaaagccaagtcgaggattacaaatcaaaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaata 39137858  T
Q  358 agttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacacc 457  Q
    ||||||||||| | || ||    ||||||||||||            |||||| |  || ||||||| |  ||||||||  |||||  |||||||  |      
T  39137859 agttcaaagtactggtcaaagagctcaagttaaaa------------gaaggacagatcaaggatcctggttcaaagctggataaatttgatggacaatt 39137946  T
Q  458 gaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctagt 551  Q
    ||||||||||||  |||||||||||| || |||| |||| ||||| |||||||||||||||| ||||||||||||  |||||||||||||||||    
T  39137947 gaaggagcctgaactgacagagaaacaatttgaatcattgataaactattttgatgaggaaaaagaatcgggtaagagttcttattcatctagt 39138040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 311 - 551
Target Start/End: Complemental strand, 39381624 - 39381384
Alignment:
Q  311 gaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaagga 410  Q
    |||| ||||||||||||||  |||||||| ||| |||||||||||| ||||||||||||   ||||    ||||||||||||||||||||| ||||| ||    
T  39381624 gaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaaga 39381525  T
Q  411 gaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttg 510  Q
     ||| | ||||||| || |||||||||||||||   ||||||  |  ||| |||||| | |||||||  |||| ||||||| |||||| ||||||| |||    
T  39381524 caagacaaggatcctgattcaaagctaaataaattggatggacaaatgaaagagcctaaattgacaggtaaacaatatgaagcattaagaaaatatattg 39381425  T
Q  511 atgaggaaatagaatcgggtaaatgttcttattcatctagt 551  Q
    | |||||   |||||| ||||||||||||||||||| ||||    
T  39381424 acgaggagcaagaatctggtaaatgttcttattcatatagt 39381384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 39415043 - 39414886
Alignment:
Q  121 tgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagtttaaaac 220  Q
    |||||||| | |||||||||||||||||||| |  | |||| ||||||||||||| |||||||||| |||||| ||  ||||||||||||||||| || |    
T  39415043 tgaaggagtttgaatcaaaagaaaagaaattcagagaacaaatgaaggagttccactcaaaagagggggaattcaaaggtcaagtgaaggagtttgaatc 39414944  T
Q  221 gaagaaggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaattt 278  Q
     ||| ||||||| ||||||||||  |||||||| || ||||||||| |||||||||||    
T  39414943 aaaggaggaggagttcaaaggtcaagttaaggaactcaaatcaaaagagaagcaattt 39414886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 39152266 - 39152396
Alignment:
Q  21 caacttgatgtcagagtgaaagggttagaaccaaaggagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagccaac 120  Q
    ||||||||||   ||||||| ||||| ||| |||| |||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||||| ||    
T  39152266 caacttgatggacgagtgaaggggtttgaatcaaaagaggatgaatttgaaggccaggtgaagaagctggaatcagaaaagaagcatttcgagagccgac 39152365  T
Q  121 tgaaggagctcgaatcaaaagaaaagaaatt 151  Q
    ||||||||||||||||||  |||||| ||||    
T  39152366 tgaaggagctcgaatcaatggaaaaggaatt 39152396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 57 - 227
Target Start/End: Complemental strand, 39487859 - 39487689
Alignment:
Q  57 gagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatg 156  Q
    |||| |||| |||||||  |||||||| |||  ||||| |||||||||||||  ||||||| || ||||||||||||| || |||||||| ||  | | |    
T  39487859 gaggatgaatttgaaggccgggtgaaggagcccgaatctgaaaagaagcattctgagagccgacagaaggagctcgaagcacaagaaaagcaacatgaag 39487760  T
Q  157 gacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagtttaaaacgaagaag 227  Q
     |||| ||||||||||||||||||||||||||||||| |   | || ||||||||||||||||| ||||||    
T  39487759 aacaaatgaaggagttccagtcaaaagaggaggaattcagaggacacgtgaaggagtttaaaacaaagaag 39487689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 249 - 424
Target Start/End: Complemental strand, 39192615 - 39192440
Alignment:
Q  249 aaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaa 348  Q
    ||||| ||| |||| | ||||||||| |||||||   | || ||||| |||||||||| || ||||||||| |||| ||||||||  ||||| |||||||    
T  39192615 aaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaa 39192516  T
Q  349 aagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 424  Q
    |||||||||||||||||| ||  ||||||   ||||| |||||||| |||||| ||||||||  |||| |||||||    
T  39192515 aagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcc 39192440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 249 - 424
Target Start/End: Complemental strand, 39198295 - 39198120
Alignment:
Q  249 aaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaa 348  Q
    ||||| ||| |||| | ||||||||| |||||||   | || ||||| |||||||||| || ||||||||| |||| ||||||||  ||||| |||||||    
T  39198295 aaggaacttgaatctagaaagaagcattttaaaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaa 39198196  T
Q  349 aagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 424  Q
    |||||||||||||||||| ||  ||||||   ||||| |||||||| |||||| ||||||||  |||| |||||||    
T  39198195 aagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcc 39198120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 87 - 551
Target Start/End: Original strand, 39369835 - 39370278
Alignment:
Q  87 ctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagagg 186  Q
    |||||||| |||||||||||| ||||||||  |||| ||||||||||||||||||||||| ||||           |||||||        |||||||      
T  39369835 ctggaatcggaaaagaagcatatcgagagcagactgcaggagctcgaatcaaaagaaaagcaatt-----------tgaagga--------caaaaga-- 39369913  T
Q  187 aggaatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaa 286  Q
    |||| |||||  ||| |||||||| | || || | ||| ||||||||||  ||||||| ||||||||| | || ||| ||| |||||||||| ||||| |    
T  39369914 aggagtttaaaggtcgagtgaaggtgcttgaatcaaaggaggaggaatttgaaggtcgagttaaggagttcaagtcagaaaggaagcaatttgaaaccca 39370013  T
Q  287 ggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaag 386  Q
     || ||| | |||||||| | ||  ||||||||||||| ||| ||||||||||| |||| ||||||||| ||||||| |||    ||||||    || |     
T  39370014 agtcgagcacttcaaatcgaaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaa 39370113  T
Q  387 ttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccgaaggagcctgagttgacagagaaacgat 486  Q
    ||||||||||||||| ||| | || ||||| ||| ||  ||||||||| | ||||||   ||||||  ||  ||| ||||||||| |||| |||||| ||    
T  39370114 ttaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaaacaat 39370213  T
Q  487 atgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctagt 551  Q
    ||||  |||||| | |  || |||  ||||||| ||| | |||||||||||||||||||||||||    
T  39370214 atgacgcattaacagagcatattgccgaggaaaaagatttgggtaaatgttcttattcatctagt 39370278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 44614607 - 44614713
Alignment:
Q  90 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggagg 189  Q
    |||||||||||||||||||||||||||| ||  |||||  | ||||||||||||||| ||||| |  ||  ||||||||||||||||||| |||||||||    
T  44614607 gaatcagaaaagaagcatttcgagagccgacaaaaggaatttgaatcaaaagaaaaggaatttgaaagaagagtgaaggagttccagtcagaagaggagg 44614706  T
Q  190 aatttaa 196  Q
    |||||||    
T  44614707 aatttaa 44614713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 238 - 421
Target Start/End: Original strand, 39468196 - 39468379
Alignment:
Q  238 aaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaaga 337  Q
    ||||||| |||||||||||  |||||||||||||  | ||| | |   | |||||||| |||||||||| ||  ||||||||||| ||||| || |||||    
T  39468196 aaggtcgagttaaggagctcgaatcaaaaaagaaatattttgacagtcaagttgaggatttcaaatcaaaagataagcaatttgatgaacggtgtaaaga 39468295  T
Q  338 actcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgagga 421  Q
    | |  ||||||||||||||  |||||||||||  ||||||    |||||||||||||||||||| |||||||| ||||| ||||    
T  39468296 attgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 259 - 424
Target Start/End: Original strand, 39222763 - 39222928
Alignment:
Q  259 aatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataa 358  Q
    |||||||||||||||| ||  ||| | | || ||||| || ||||||| || ||||||||||||||||||||||||  |||| |||||| ||||||||||    
T  39222763 aatcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataa 39222862  T
Q  359 gttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 424  Q
    |||||||| ||  ||||||   ||||| || ||||| |||  | |||||||| ||||| |||||||    
T  39222863 gttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcc 39222928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 259 - 452
Target Start/End: Complemental strand, 39389302 - 39389109
Alignment:
Q  259 aatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataa 358  Q
    ||||| ||||| |||| || |||| | | |||||||| |||||||||| || | ||| |||| ||  ||||||||| ||||| ||||  |||||| ||||    
T  39389302 aatcacaaaaggagcatttgaaaagccaagttgaggacttcaaatcaaaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataa 39389203  T
Q  359 gttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatgga 452  Q
    |||||||||||  ||||||   ||||| |||||||| |||||| |||||||  ||||| | ||||| ||||||||||| ||||||  |||||||    
T  39389202 gttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatgga 39389109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 471
Target Start/End: Original strand, 39161720 - 39161932
Alignment:
Q  259 aatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataa 358  Q
    |||||||||| ||||| ||| |||   | |||||||| |||||||||| |  ||| |||||||||| ||| ||||| ||||| ||| | |||||| ||||    
T  39161720 aatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataa 39161819  T
Q  359 gttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccg 458  Q
    | |||||||||  | ||||   ||||| |||||||| |||||  |||||||| ||||| |||||||  |||||||| | ||||||  |||||||  ||      
T  39161820 gctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaacta 39161919  T
Q  459 aaggagcctgagt 471  Q
    |||||||||||||    
T  39161920 aaggagcctgagt 39161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 471
Target Start/End: Complemental strand, 39207474 - 39207262
Alignment:
Q  259 aatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataa 358  Q
    |||||||||| ||||| ||| |||   | |||||||| |||||||||| |  ||| |||||||||| ||| ||||| ||||| ||| | |||||| ||||    
T  39207474 aatcaaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataa 39207375  T
Q  359 gttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacaccg 458  Q
    | |||||||||  | ||||   ||||| |||||||| |||||  |||||||| ||||| |||||||  |||||||| | ||||||  |||||||  ||      
T  39207374 gctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaacta 39207275  T
Q  459 aaggagcctgagt 471  Q
    |||||||||||||    
T  39207274 aaggagcctgagt 39207262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 630 - 667
Target Start/End: Complemental strand, 39380928 - 39380891
Alignment:
Q  630 tatgagggagcttaaatatctgctatctaaatatgcag 667  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39380928 tatgagggagcttaaatatctgctatctaaatatgcag 39380891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 547
Target Start/End: Complemental strand, 39389082 - 39389035
Alignment:
Q  500 aaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatc 547  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  39389082 aaaatattttgatggggaaaaagaatccggtaaatgttcttattcatc 39389035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 39161940 - 39161990
Alignment:
Q  500 aaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctag 550  Q
    ||||||| |||||||||||| |||||| ||||||||||||| |||||||||    
T  39161940 aaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctag 39161990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 39207254 - 39207204
Alignment:
Q  500 aaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctag 550  Q
    ||||||| |||||||||||| |||||| ||||||||||||| |||||||||    
T  39207254 aaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctag 39207204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 39381737 - 39381639
Alignment:
Q  156 ggacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggag 254  Q
    |||||| |||||||||| || | |||||||||||||||| |  |  ||||||||||  ||||| | |||||||||||| |||||||||  |||||||||    
T  39381737 ggacaaatgaaggagtttcaattaaaagaggaggaatttgaaggcaaagtgaaggaaattaaatcaaagaaggaggaactcaaaggtcaagttaaggag 39381639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 39389424 - 39389346
Alignment:
Q  116 ccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaattt 194  Q
    |||| |||||||||| || ||||||||  |||||||  | ||| ||||||||||||| || ||||||||||||||||||    
T  39389424 ccaaatgaaggagcttgagtcaaaagaggagaaattcgaaggaaaagtgaaggagtttcaatcaaaagaggaggaattt 39389346  T

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Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 548
Target Start/End: Original strand, 39222941 - 39222989
Alignment:
Q  500 aaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatct 548  Q
    ||||||| ||||||  |||| ||||||||||||||||||||||||||||    
T  39222941 aaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatct 39222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 667
Target Start/End: Complemental strand, 39196955 - 39196925
Alignment:
Q  637 gagcttaaatatctgctatctaaatatgcag 667  Q
    |||||||||||||||||||||||||||||||    
T  39196955 gagcttaaatatctgctatctaaatatgcag 39196925  T

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Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 345
Target Start/End: Complemental strand, 39487689 - 39487655
Alignment:
Q  311 gaagcaatttgaagaacgatggaaagaactcgagt 345  Q
    |||||||||||||||| ||||||||||||||||||    
T  39487689 gaagcaatttgaagaaagatggaaagaactcgagt 39487655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 39124615 - 39124668
Alignment:
Q  315 caatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagta 368  Q
    ||||| |||| |||||||||||| ||||||||| |||||||  |||||||||||    
T  39124615 caattagaaggacgatggaaagagctcgagtcagaagagaaggagttcaaagta 39124668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 39130365 - 39130426
Alignment:
Q  121 tgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaa 182  Q
    ||||||||||||||||| || | ||||||||  | |||| | ||||||||||||||||||||    
T  39130365 tgaaggagctcgaatcagaaaagaagaaattcgaaggacgattgaaggagttccagtcaaaa 39130426  T

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Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 2361524 - 2361576
Alignment:
Q  226 aggaggaattcaaaggtcgggttaaggagcttaaatcaaaaaagaagcaattt 278  Q
    ||||||||||| || | | ||| ||||||||| ||||||||||||||||||||    
T  2361524 aggaggaattcgaaaggcaggtgaaggagcttgaatcaaaaaagaagcaattt 2361576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 39192419 - 39192379
Alignment:
Q  508 ttgatgaggaaatagaatcgggtaaatgttcttattcatct 548  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  39192419 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatct 39192379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 508 - 548
Target Start/End: Complemental strand, 39198099 - 39198059
Alignment:
Q  508 ttgatgaggaaatagaatcgggtaaatgttcttattcatct 548  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  39198099 ttgatgaggaaaaagaatcaggtaaatgtgcttattcatct 39198059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 523 - 551
Target Start/End: Original strand, 39215750 - 39215778
Alignment:
Q  523 aatcgggtaaatgttcttattcatctagt 551  Q
    |||||||||||||||||||||||||||||    
T  39215750 aatcgggtaaatgttcttattcatctagt 39215778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 39451794 - 39451858
Alignment:
Q  78 gtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaaga 142  Q
    |||||| | ||||||||  ||||||||||||| || |||||| || |||||||| ||||||||||    
T  39451794 gtgaaggatctggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaaaaga 39451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 238 - 551
Target Start/End: Original strand, 16113156 - 16113469
Alignment:
Q  238 aaggtcgggttaaggagcttaaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaaga 337  Q
    ||||||| ||||||||| |  |||||||||| ||||| ||  ||| | | |||||| | ||||||||||  |  ||||||||||||||||| ||||||||    
T  16113156 aaggtcgagttaaggagatcgaatcaaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaaga 16113255  T
Q  338 actcgagtcaaaagagaataagttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagcta 437  Q
    |||||| |||||||||||| ||||||||||||  | ||||   ||||||||||||||||||||| |||||| | ||||| |||| |  |||||||||||     
T  16113256 actcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctg 16113355  T
Q  438 aataaacatgatggaacaccgaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgtt 537  Q
    ||  ||  ||  |||  || ||||||||||||||| |||| |||||  | |||| |||| | |||| || |||| ||||||| |||||||||||| ||||    
T  16113356 aacgaatttggcggacaactgaaggagcctgagttaacagggaaacactctgaagcatttaaaaaacatattgacgaggaaaaagaatcgggtaagtgtt 16113455  T
Q  538 cttattcatctagt 551  Q
    || |||||||||||    
T  16113456 ctcattcatctagt 16113469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 258 - 551
Target Start/End: Original strand, 19807709 - 19807990
Alignment:
Q  258 aaatcaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaata 357  Q
    ||||||||| |||||||| || ||| | | || ||||||| |||||||| || ||| ||| |||||||| | ||||||||||||||||||||||||||||    
T  19807709 aaatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaata 19807808  T
Q  358 agttcaaagtaatagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcccgagtcaaagctaaataaacatgatggaacacc 457  Q
    ||||||||||| | || ||    ||||||||||||||            |||| || || ||||||| |  ||||||||  |||||  |||||||  |      
T  19807809 agttcaaagtactggtcaaagagctcaagttaaaaga------------aggaaaaatcaaggatcctggttcaaagctggataaatttgatggacaatt 19807896  T
Q  458 gaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatctagt 551  Q
    ||||||| |||||||||||||||||| || |||| |||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||    
T  19807897 gaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatcgggtaaaagttcttattcatctagt 19807990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 19807466 - 19807732
Alignment:
Q  57 gagggtgaacttgaagggtgggtgaagaagctggaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatg 156  Q
    |||| |||| |||||||  ||| |||| |||| ||||| |||||||||||||||||||||| || ||||  ||||||| || |||||||| ||| | | |    
T  19807466 gaggatgaatttgaaggccgggcgaaggagctcgaatctgaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaag 19807565  T
Q  157 gacaagtgaaggagttccagtcaaaagaggaggaatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagct 256  Q
     |||| |||||||||||||||||||||| |||||||| ||    || |||||||| ||| || | ||| | ||||  ||| ||||||| ||||||||| |    
T  19807566 aacaaatgaaggagttccagtcaaaagaagaggaattcaaagcacacgtgaaggattttgaatcaaaggatgaggggttcgaaggtcgagttaaggagtt 19807665  T
Q  257 taaatcaaaaaagaagcaatt-taaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaa 323  Q
     |||| |||||||||||||||  |||||||| |||||||| |||||||||| || ||||||| |||||    
T  19807666 caaataaaaaaagaagcaattcgaaaaccaa-gttgaggacttcaaatcaaaagagaagcaacttgaa 19807732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 33560754 - 33560847
Alignment:
Q  100 agaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatt 193  Q
    |||||||| |||| | |||| ||||||||||||| ||||||||  ||||||| || ||||||||||||||||| || |||||||||||||||||    
T  33560754 agaagcatgtcgaaaaccaaatgaaggagctcgagtcaaaagaggagaaattcaaaggacaagtgaaggagtttcaatcaaaagaggaggaatt 33560847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 44951305 - 44951214
Alignment:
Q  105 catttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaa 196  Q
    |||||||||| || | |||||||| | ||||||| |||||| ||||| || | ||||| ||||||||| |||||||||||||||||||||||    
T  44951305 catttcgagatccgaatgaaggagtttgaatcaagagaaaataaattcaaagaacaagagaaggagtttcagtcaaaagaggaggaatttaa 44951214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 662
Target Start/End: Original strand, 45342748 - 45342780
Alignment:
Q  630 tatgagggagcttaaatatctgctatctaaata 662  Q
    |||||| ||||||||||||||||||||||||||    
T  45342748 tatgagagagcttaaatatctgctatctaaata 45342780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 4257 - 4321
Alignment:
Q  132 gaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggaggaatttaa 196  Q
    ||||||| |||||||| ||| || ||||||| ||||||||| |||||||||||||||||||||||    
T  4257 gaatcaagagaaaagatattcaaaggacaagagaaggagtttcagtcaaaagaggaggaatttaa 4321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 51574944 - 51574996
Alignment:
Q  90 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaaga 142  Q
    |||||||||||||||||||| || |||||| ||||||| ||| ||||||||||    
T  51574944 gaatcagaaaagaagcattttgaaagccaagtgaaggaactcaaatcaaaaga 51574996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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