View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_high_36 (Length: 242)
Name: NF16508_high_36
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 3255868 - 3255651
Alignment:
| Q |
17 |
ttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatca |
116 |
Q |
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| T |
3255868 |
ttctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatca |
3255769 |
T |
|
| Q |
117 |
acccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagt |
216 |
Q |
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| T |
3255768 |
acccctcaaaatgtttcgcctcaagtgtcgttttaaagaccacaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagt |
3255669 |
T |
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| Q |
217 |
attgaggaagttcatctc |
234 |
Q |
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|||||||||||||||||| |
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| T |
3255668 |
attgaggaagttcatctc |
3255651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 230
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
| Q |
28 |
gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc |
123 |
Q |
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| T |
14020277 |
gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc |
14020376 |
T |
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| Q |
124 |
aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg |
223 |
Q |
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| T |
14020377 |
aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg |
14020476 |
T |
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| Q |
224 |
aagttca |
230 |
Q |
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|| |||| |
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| T |
14020477 |
aacttca |
14020483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 14271406 - 14271572
Alignment:
| Q |
65 |
gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca |
164 |
Q |
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| T |
14271406 |
gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca |
14271505 |
T |
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| Q |
165 |
aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttca |
230 |
Q |
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| T |
14271506 |
aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttca |
14271572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 14017848 - 14017981
Alignment:
| Q |
101 |
ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc |
200 |
Q |
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| T |
14017848 |
ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc |
14017947 |
T |
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| Q |
201 |
ctcaaaacagcgtagtattgaggaagttcatctc |
234 |
Q |
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| T |
14017948 |
cacaaaacgacattgtattgaggaatttcatctc |
14017981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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