View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_high_5 (Length: 663)
Name: NF16508_high_5
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 41 - 593
Target Start/End: Original strand, 47034965 - 47035517
Alignment:
| Q |
41 |
agttagagtcaaggtttgttaatcttcaatccctctttgcattttgtagatttgttgtgatatatgagaggtaagcactttgaacccactttttggtgtt |
140 |
Q |
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| T |
47034965 |
agttagagtcaaggtttgttaatcttcaatccctcttttcattttgtagatttgttgtgatatatgagaggtaagcactttgaacccactttttggtgtt |
47035064 |
T |
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| Q |
141 |
tagttaacatgtgttttatggttttgttatttatttgttgaatgtgcgtactattctactgttctttataacaacaatattagttaaaacgtgttagcta |
240 |
Q |
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| T |
47035065 |
tagttaacatgtgttttattgttttgttatttatttgttgaatgtgcgtactattctactgttctttataacaaca--attagttaaaacgtgttagcta |
47035162 |
T |
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| Q |
241 |
aagaaattgggacatttcgaacaaccctcgtacattatatcaaccaggctctgacttatatattcnnnnnnngaaacagaacgatgaaaacagtccatct |
340 |
Q |
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| T |
47035163 |
aagaaattgggacatttcgaacaaccctcgtacattatatcaaccaggctctgacttatatattctttttttgaaacagaacgatgaaaacagtccatct |
47035262 |
T |
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| Q |
341 |
agtgcgtagttgtacatgaaattgttgcagctgatttataaaatcttattaaacaaatttttaaattgatttcttc--aannnnnnnaatctatactatg |
438 |
Q |
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| T |
47035263 |
agtgcgtagttgtacatgaaattgttgcagctgatttataaaatcttattaaacaaatttttaaattgatttcttcaaaaaaaaaaaaatctatactatg |
47035362 |
T |
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| Q |
439 |
ttttaacagttttttaaattgacatctacattattttccatcccaactcaacatttgttaataaatttattgtttggttttttaggtttactactatgaa |
538 |
Q |
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| T |
47035363 |
ttttaacaattttttaaattgacttctacattattttccatcccaactcaacatttgttaatatatttattgtttggttttttaggtttactactataaa |
47035462 |
T |
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| Q |
539 |
ggactggtgatagcaaacaagcatggaacaaggataaagtagaagagagtgttta |
593 |
Q |
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| T |
47035463 |
ggactggtgatagcaaacaagcatggaacaaggataaagtagaagagagtgttta |
47035517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 646
Target Start/End: Original strand, 47035516 - 47035560
Alignment:
| Q |
605 |
tatgaattctccttgatctcc---tctaattagaccaccacaacc |
646 |
Q |
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| T |
47035516 |
tatgaattctccttgatctcctcctctaattagaccaccacaacc |
47035560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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