View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_high_8 (Length: 513)

Name: NF16508_high_8
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_high_8
NF16508_high_8
[»] chr4 (4 HSPs)
chr4 (19-500)||(6029727-6030201)
chr4 (38-102)||(6034561-6034625)
chr4 (299-374)||(6037686-6037761)
chr4 (233-285)||(6030479-6030531)
[»] chr5 (12 HSPs)
chr5 (307-448)||(31475648-31475786)
chr5 (299-448)||(40843022-40843168)
chr5 (299-448)||(31284963-31285109)
chr5 (309-444)||(31279194-31279326)
chr5 (309-448)||(31407131-31407267)
chr5 (299-448)||(31281678-31281824)
chr5 (299-448)||(31505595-31505741)
chr5 (309-448)||(31643589-31643725)
chr5 (299-387)||(31332435-31332523)
chr5 (299-448)||(31317604-31317750)
chr5 (299-385)||(31381222-31381308)
chr5 (307-448)||(31396005-31396143)
[»] chr3 (1 HSPs)
chr3 (300-386)||(25708754-25708840)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 6029727 - 6030201
Alignment:
Q  19 tcaacttctcttcggttgaggtttcgtggcagaatggatcgatgagagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggaga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6029727 tcaacttctcttcggttgaggttttgtggcagaatggatcgatgtgagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggaga 6029826  T
Q  119 agatttatttagttcnnnnnnnnnnnn----agg--aatactgaaataagactatatgcatattctccatctcctagt-gatataggtcacaaaaatttg 211  Q
    ||||||||||||||                 |||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6029827 agatttatttagtttctttttttttttttttaggttaatactgaaataagactatatgcatgttctccatctcctagttgatataggtcacaaaaatttg 6029926  T
Q  212 tgcaatatgtcgtatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaactccttctgtttataactgaaattt 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
T  6029927 tgcaatatgtcatatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaact----------------gaaattt 6030010  T
Q  312 aatcttcatgagtatcatagttagacatcc-gagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgacat 410  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6030011 aatcttcatgagtatcatagttagacatcctgagtaaaatgtaaagaagatccacttcgaatccgcactgagtttgcagtgtcgacaaactcattgacat 6030110  T
Q  411 gataagaaaggtagcacatgaaataagactatatgcatgttttcca-ctactacgatggttaaatacttggaatttttgggtaatgttttt 500  Q
    |||||||||||||| |||||||| | |||||||||||||||||||| || ||||||||| ||||||||||||||| || || |||||||||    
T  6030111 gataagaaaggtagaacatgaaagaggactatatgcatgttttccatctcctacgatggctaaatacttggaattattaggaaatgttttt 6030201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 6034561 - 6034625
Alignment:
Q  38 ggtttcgtggcagaatggatcgatgagagcaggagaagcttgccgctaagaatatcaaagagatg 102  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  6034561 ggtttcgtggcagaatggatcgttgtgagcaggagaagcttgccgctaagaatttcaaagagatg 6034625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 6037686 - 6037761
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatcc 374  Q
    ||||||| |||| |||| ||||||||| || ||||||||||| ||| |||||||||| ||||| ||||||||||||    
T  6037686 ataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatcc 6037761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 6030479 - 6030531
Alignment:
Q  233 aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta 285  Q
    ||||||||||||||||||||||||||||| ||| | | |||||| ||||||||    
T  6030479 aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgta 6030531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 307 - 448
Target Start/End: Original strand, 31475648 - 31475786
Alignment:
Q  307 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 406  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||   || | || ||||||| ||    
T  31475648 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgagatt---gcctcgagaaactcagtg 31475744  T
Q  407 acatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||||  ||||| |||||| ||||| || ||||| ||||    
T  31475745 acatgatagcaaaggcagcacaagaaatgaggctataagcat 31475786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 299 - 448
Target Start/End: Original strand, 40843022 - 40843168
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| || |||| ||   || | |||||    
T  40843022 ataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatccacttcgaatccacaatgagatt---gcctcgacaa 40843118  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||| ||||||||||  ||||| |||||| ||||| || ||||| ||||    
T  40843119 actcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcat 40843168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31285109 - 31284963
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||||||||||||||  || | ||| ||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||  ||| |||||    
T  31285109 ataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgc--cgt-gacaa 31285013  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||| ||||||||  ||||| |||||||||||| || ||||||||||    
T  31285012 actcattaacatgatagaaaaggaagcacatgaaatgaggctatatgcat 31284963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 444
Target Start/End: Original strand, 31279194 - 31279326
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||   |||||||| | ||||    
T  31279194 tttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtttgccgc---gacaaactaagtgac 31279290  T
Q  409 atgataagaaaggtagcacatgaaataagactatat 444  Q
    ||||||  ||||| |||||||||||| || ||||||    
T  31279291 atgatagcaaaggaagcacatgaaatgaggctatat 31279326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 31407131 - 31407267
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||  |||| |||||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    | ||||| |||||||||    
T  31407131 tttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgcc---ttgacaagctcattgac 31407227  T
Q  409 atgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||  |||||  ||||||||||| |  ||||||||||    
T  31407228 atgatagcaaaggcggcacatgaaatcaagctatatgcat 31407267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31281824 - 31281678
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||| ||||||||||  || | ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||   || |  ||||    
T  31281824 ataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgagttt---gccttaacaa 31281728  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| | ||||||||||  |||||  ||||||||||| ||||| |||||||    
T  31281727 acttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcat 31281678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 448
Target Start/End: Original strand, 31505595 - 31505741
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| |||||||||||||| |||   | | ||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| ||   |||||    
T  31505595 ataactgcaatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgc---gacaa 31505691  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| |  |||||||||  ||||| ||||| |||||| || ||||||||||    
T  31505692 actgagcgacatgatagcaaaggaagcacttgaaatgaggctatatgcat 31505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 31643589 - 31643725
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| | ||| |||||||||| |||||   |||| |||||||| | ||||    
T  31643589 tttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagttt---gcgtcgacaaactaagtgac 31643685  T
Q  409 atgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||  ||||| |||||| ||||| || ||||||||||    
T  31643686 atgatagcaaaggaagcacaagaaatgaggctatatgcat 31643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 31332523 - 31332435
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgc 387  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||||    
T  31332523 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtttgc 31332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31317750 - 31317604
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| || |||||||||||||||   | | |||||||||| || ||||| ||||||||||| | ||| ||||| ||||||||||||    | |||||    
T  31317750 ataactgcaacttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgcc---ttgacaa 31317654  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| | |||||| |||  ||||| |||||||||||| | |||||||||||    
T  31317653 actaagtgacataatagcaaaggcagcacatgaaattaaactatatgcat 31317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 385
Target Start/End: Complemental strand, 31381308 - 31381222
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagttt 385  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||    
T  31381308 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagttt 31381222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 31396143 - 31396005
Alignment:
Q  307 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 406  Q
    ||||||||||||||||||   | | ||| |||||||||  ||||||| | |||||||||||| ||||| |||||| |||||  ||   |||| || | ||    
T  31396143 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcg---acaagctaagtg 31396047  T
Q  407 acatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    |||| |||  ||||| |||||||||||| |||||||||||||    
T  31396046 acatcatagaaaaggcagcacatgaaattagactatatgcat 31396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 25708840 - 25708754
Alignment:
Q  300 taactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttg 386  Q
    |||||| ||||| | ||||||||||  || | |||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagtttg 25708754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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