View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_1 (Length: 1042)
Name: NF16508_low_1
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_1 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 263 - 1009
Target Start/End: Original strand, 40465190 - 40465946
Alignment:
| Q |
263 |
ttacttcctcaatgatgataaagaatatnnnnnnnggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttca |
362 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465190 |
ttacttcctcaatgatgataaagaatataaaaaaaggataatgccaatgagaatctaaagggtgtaatatggaacatggagagaaagacaaaatggttca |
40465289 |
T |
|
| Q |
363 |
gaaggataaacaaccccagattgccaggtgtatattgatagataagtttgtaaatttaaactataacataaaaatgctacaagagnnnnnnnntcatgca |
462 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
40465290 |
gaaggataaacaaccccagattgccaggtgtatattgatagataagtttgtaaatttgaactatagcataaaaatgctacaagagaaaaaaa-tcatgca |
40465388 |
T |
|
| Q |
463 |
accactagttccc--acttgaatgaataatcacacacaaaaatacaaatgcgaaacttagatattgagataacaaaagtatggttgaaattcacttaaaa |
560 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465389 |
accactagttcccccacttgaatgaataatcacacacaaaaatacaaattcgaaacttagatattgagataacaaaagtatggttgaaattcacttaaaa |
40465488 |
T |
|
| Q |
561 |
taagcaactcttgtgtagcatgtttagtcattttctttattttatttt----------gaaatgaagatatgatatgaatgc----ttccaaagttgcat |
646 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
40465489 |
taagcaactcttgtgtagcatgtttagtcattttctttattttattttattttattttgaaatgaagatatgatatgaatgcaagcttccaaagttgcat |
40465588 |
T |
|
| Q |
647 |
aactttacctctcttggcattagtgttctgggaatcactctgnnnnnnnnnnnnnnnnnnnngttagttgaatttaactaaatatatagcagtcgtgcat |
746 |
Q |
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| T |
40465589 |
aactttacctctcttggcattagtgttttcggaatcactctgaaaacaaaaacaaaacaaaagttagttgagtttaactaaatatatagcagtcgtgcat |
40465688 |
T |
|
| Q |
747 |
tttagaatcacgaaaaaatttgacaatatcacggtgacacaatgtgattatgctagggtttccgtaaatacaaacaaatagctttaaaaataagaatatg |
846 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
40465689 |
tttagaatcacgaaaaa-tttgacaatatcacggtgacacaatgtgattatgctagggtttccgtaaatacaaacaaatagctttaaaaagaaga---tg |
40465784 |
T |
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| Q |
847 |
aagctcttggcttacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaa |
946 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465785 |
aagctcttg-cttacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaa |
40465883 |
T |
|
| Q |
947 |
tatttcttgacacctttttatatatcaaaatacaacgaagtttagaactaaacaccatattat |
1009 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40465884 |
tatttcttgacacctttttatatatcaaaatacaacgaagtttagaactaaacaccatattat |
40465946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 40464944 - 40465026
Alignment:
| Q |
16 |
gtatgacatatttcgaataaaagtatctttagtggagcttatttatagtgaactaaaataaaaagttgtcgcaaaaagcttcc |
98 |
Q |
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| T |
40464944 |
gtatgacatatttcgaataaaattatctttagtggagtttatttatagggaactaaaataaaaagttgtcgcaaaaagcttcc |
40465026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 40465088 - 40465150
Alignment:
| Q |
161 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagg |
223 |
Q |
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| T |
40465088 |
gacaattattgttgaacgaattaaatattagatttatatggccaagcttaaatttatgatagg |
40465150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 860 - 966
Target Start/End: Complemental strand, 21625405 - 21625299
Alignment:
| Q |
860 |
acccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgacac |
959 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
21625405 |
acccaatcacatgtcgacctccatcagaaacagcttgagaaaccaaccccatcaaaccaatgctgcctcctccataaaccaaatcaatatttcttgacac |
21625306 |
T |
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| Q |
960 |
cttttta |
966 |
Q |
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||||||| |
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| T |
21625305 |
cttttta |
21625299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 859 - 962
Target Start/End: Original strand, 28271406 - 28271509
Alignment:
| Q |
859 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
958 |
Q |
| |
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||||| || ||||||| |||||||||| ||||||||| |||| ||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
28271406 |
taccctatgacatgtcttccaccatcatgaacagcttgtgaaaccaaacccattagaccaatgcttcctcctccataaactagatcaatatttcttgaca |
28271505 |
T |
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| Q |
959 |
cctt |
962 |
Q |
| |
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|||| |
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| T |
28271506 |
cctt |
28271509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 859 - 962
Target Start/End: Complemental strand, 77319 - 77216
Alignment:
| Q |
859 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
958 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||||||||| || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| | |
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| T |
77319 |
tacccaatgacatggcgaccaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaa |
77220 |
T |
|
| Q |
959 |
cctt |
962 |
Q |
| |
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|||| |
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|
| T |
77219 |
cctt |
77216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 859 - 962
Target Start/End: Original strand, 40888965 - 40889068
Alignment:
| Q |
859 |
tacccaattacatgtcgaccaccatcataaacagcttgagaaatcaaccccatcaaaccaatgctgcctcctccataaactaggtcaatatttcttgaca |
958 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||||||||||||| || ||||| | ||||||||| ||||||||||| || || ||||| || ||||| | |
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| T |
40888965 |
tacccaatgacatggcgaccaccatcatgaacagcttgagaaactaaacccatgagaccaatgcttcctcctccatacacaagatcaatgttccttgaaa |
40889064 |
T |
|
| Q |
959 |
cctt |
962 |
Q |
| |
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|||| |
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|
| T |
40889065 |
cctt |
40889068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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