View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_low_10 (Length: 513)

Name: NF16508_low_10
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_low_10
NF16508_low_10
[»] chr4 (4 HSPs)
chr4 (19-500)||(6029727-6030201)
chr4 (38-102)||(6034561-6034625)
chr4 (299-374)||(6037686-6037761)
chr4 (233-285)||(6030479-6030531)
[»] chr5 (12 HSPs)
chr5 (307-448)||(31475648-31475786)
chr5 (299-448)||(40843022-40843168)
chr5 (299-448)||(31284963-31285109)
chr5 (309-444)||(31279194-31279326)
chr5 (309-448)||(31407131-31407267)
chr5 (299-448)||(31281678-31281824)
chr5 (299-448)||(31505595-31505741)
chr5 (309-448)||(31643589-31643725)
chr5 (299-387)||(31332435-31332523)
chr5 (299-448)||(31317604-31317750)
chr5 (299-385)||(31381222-31381308)
chr5 (307-448)||(31396005-31396143)
[»] chr3 (1 HSPs)
chr3 (300-386)||(25708754-25708840)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 500
Target Start/End: Original strand, 6029727 - 6030201
Alignment:
Q  19 tcaacttctcttcggttgaggtttcgtggcagaatggatcgatgagagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggaga 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6029727 tcaacttctcttcggttgaggttttgtggcagaatggatcgatgtgagcaggagaagcttgccgctaagaatatcaaagagatgatagcattggaggaga 6029826  T
Q  119 agatttatttagttcnnnnnnnnnnnn----agg--aatactgaaataagactatatgcatattctccatctcctagt-gatataggtcacaaaaatttg 211  Q
    ||||||||||||||                 |||  ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6029827 agatttatttagtttctttttttttttttttaggttaatactgaaataagactatatgcatgttctccatctcctagttgatataggtcacaaaaatttg 6029926  T
Q  212 tgcaatatgtcgtatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaactccttctgtttataactgaaattt 311  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||    
T  6029927 tgcaatatgtcatatgatcctaaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgtaact----------------gaaattt 6030010  T
Q  312 aatcttcatgagtatcatagttagacatcc-gagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgacat 410  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  6030011 aatcttcatgagtatcatagttagacatcctgagtaaaatgtaaagaagatccacttcgaatccgcactgagtttgcagtgtcgacaaactcattgacat 6030110  T
Q  411 gataagaaaggtagcacatgaaataagactatatgcatgttttcca-ctactacgatggttaaatacttggaatttttgggtaatgttttt 500  Q
    |||||||||||||| |||||||| | |||||||||||||||||||| || ||||||||| ||||||||||||||| || || |||||||||    
T  6030111 gataagaaaggtagaacatgaaagaggactatatgcatgttttccatctcctacgatggctaaatacttggaattattaggaaatgttttt 6030201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 6034561 - 6034625
Alignment:
Q  38 ggtttcgtggcagaatggatcgatgagagcaggagaagcttgccgctaagaatatcaaagagatg 102  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  6034561 ggtttcgtggcagaatggatcgttgtgagcaggagaagcttgccgctaagaatttcaaagagatg 6034625  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 6037686 - 6037761
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatcc 374  Q
    ||||||| |||| |||| ||||||||| || ||||||||||| ||| |||||||||| ||||| ||||||||||||    
T  6037686 ataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatcc 6037761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 6030479 - 6030531
Alignment:
Q  233 aaaggttcctaataaatgcaacttttatgttatcagtttgtttgttgtttgta 285  Q
    ||||||||||||||||||||||||||||| ||| | | |||||| ||||||||    
T  6030479 aaaggttcctaataaatgcaacttttatggtatgaatctgtttggtgtttgta 6030531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 307 - 448
Target Start/End: Original strand, 31475648 - 31475786
Alignment:
Q  307 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 406  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||   || | || ||||||| ||    
T  31475648 aatttaatcttcatgagtaacacagttagacatccgagaaaaaagtaaagaagatccacttcgaatccacactgagatt---gcctcgagaaactcagtg 31475744  T
Q  407 acatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||||  ||||| |||||| ||||| || ||||| ||||    
T  31475745 acatgatagcaaaggcagcacaagaaatgaggctataagcat 31475786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 299 - 448
Target Start/End: Original strand, 40843022 - 40843168
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||||| || |||| ||   || | |||||    
T  40843022 ataactggaatttaatcttcatgagtaacacagttagacatccaagaaaaaagtaaagaagatccacttcgaatccacaatgagatt---gcctcgacaa 40843118  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||| ||||||||||  ||||| |||||| ||||| || ||||| ||||    
T  40843119 actcagtgacatgatagcaaaggcagcacaagaaatgaggctataagcat 40843168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31285109 - 31284963
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||||||||||||||  || | ||| ||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||  ||| |||||    
T  31285109 ataactgcaatttaatcttcatgagttgcacaattaaacatccgagaaaaaagtaaagaaaatcgacttcaaatccgcattgagtttgc--cgt-gacaa 31285013  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||| ||||||||  ||||| |||||||||||| || ||||||||||    
T  31285012 actcattaacatgatagaaaaggaagcacatgaaatgaggctatatgcat 31284963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 444
Target Start/End: Original strand, 31279194 - 31279326
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| ||   |||||||| | ||||    
T  31279194 tttaatcttcatgagttgtacaattagacatccaagaaaaaagtaaagaagatcaacttcaaatccgcactgagtttgccgc---gacaaactaagtgac 31279290  T
Q  409 atgataagaaaggtagcacatgaaataagactatat 444  Q
    ||||||  ||||| |||||||||||| || ||||||    
T  31279291 atgatagcaaaggaagcacatgaaatgaggctatat 31279326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 31407131 - 31407267
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||  |||| |||||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    | ||||| |||||||||    
T  31407131 tttaatcttcatgagttgcataattagacatccaaggaaaaagtaaagaagatccacttcgattccacactgagattgcc---ttgacaagctcattgac 31407227  T
Q  409 atgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||  |||||  ||||||||||| |  ||||||||||    
T  31407228 atgatagcaaaggcggcacatgaaatcaagctatatgcat 31407267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31281824 - 31281678
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| ||||||| ||||||||||  || | ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||   || |  ||||    
T  31281824 ataactgcaatttaaccttcatgagttgcacaattaaacatccgagaaaaatgtaaagaagatccactacgaatccgcactgagttt---gccttaacaa 31281728  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| | ||||||||||  |||||  ||||||||||| ||||| |||||||    
T  31281727 acttagtgacatgatagcaaaggcggcacatgaaattagactgtatgcat 31281678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 448
Target Start/End: Original strand, 31505595 - 31505741
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| |||||||||||||| |||   | | ||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| ||   |||||    
T  31505595 ataactgcaatttaatcttcattagttgtacaattaaacatccgagaaaaaagtaaagaagatccacctcaaatccgcactgagtttgccgc---gacaa 31505691  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| |  |||||||||  ||||| ||||| |||||| || ||||||||||    
T  31505692 actgagcgacatgatagcaaaggaagcacttgaaatgaggctatatgcat 31505741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 309 - 448
Target Start/End: Original strand, 31643589 - 31643725
Alignment:
Q  309 tttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattgac 408  Q
    ||||||||||||||||   | | |||||||||| || ||||||||||||||||| | ||| |||||||||| |||||   |||| |||||||| | ||||    
T  31643589 tttaatcttcatgagttggacaattagacatccaaggaaaaagtaaagaagatcgaattcaaatccgcactcagttt---gcgtcgacaaactaagtgac 31643685  T
Q  409 atgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||||||  ||||| |||||| ||||| || ||||||||||    
T  31643686 atgatagcaaaggaagcacaagaaatgaggctatatgcat 31643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 387
Target Start/End: Complemental strand, 31332523 - 31332435
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgc 387  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||||    
T  31332523 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagtttgc 31332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 448
Target Start/End: Complemental strand, 31317750 - 31317604
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaa 398  Q
    ||||||| || |||||||||||||||   | | |||||||||| || ||||| ||||||||||| | ||| ||||| ||||||||||||    | |||||    
T  31317750 ataactgcaacttaatcttcatgagttgaacaattagacatcccaggaaaaaataaagaagatcaatttcaaatccccactgagtttgcc---ttgacaa 31317654  T
Q  399 actcattgacatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    ||| | |||||| |||  ||||| |||||||||||| | |||||||||||    
T  31317653 actaagtgacataatagcaaaggcagcacatgaaattaaactatatgcat 31317604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 385
Target Start/End: Complemental strand, 31381308 - 31381222
Alignment:
Q  299 ataactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagttt 385  Q
    ||||||| ||||||||||||||||||  || | |||| | ||| || ||||| ||||||||||| | ||||||||||||||||||||    
T  31381308 ataactgcaatttaatcttcatgagttgcacaattaggcttcctaggaaaaaataaagaagatcgatttcgaatccgcactgagttt 31381222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 448
Target Start/End: Complemental strand, 31396143 - 31396005
Alignment:
Q  307 aatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttgcagcgtggacaaactcattg 406  Q
    ||||||||||||||||||   | | ||| |||||||||  ||||||| | |||||||||||| ||||| |||||| |||||  ||   |||| || | ||    
T  31396143 aatttaatcttcatgagttgtacaattaaacatccgagataaaagtacataagatccacttcaaatccacactgaatttgcctcg---acaagctaagtg 31396047  T
Q  407 acatgataagaaaggtagcacatgaaataagactatatgcat 448  Q
    |||| |||  ||||| |||||||||||| |||||||||||||    
T  31396046 acatcatagaaaaggcagcacatgaaattagactatatgcat 31396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 386
Target Start/End: Complemental strand, 25708840 - 25708754
Alignment:
Q  300 taactgaaatttaatcttcatgagtatcatagttagacatccgagtaaaaagtaaagaagatccacttcgaatccgcactgagtttg 386  Q
    |||||| ||||| | ||||||||||  || | |||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||    
T  25708840 taactgcaattttaccttcatgagttgcacaattagacatccaagaaaaaaataaagaagatcaacttcaaatccacactgagtttg 25708754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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