View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_low_11 (Length: 505)

Name: NF16508_low_11
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_low_11
NF16508_low_11
[»] chr8 (7 HSPs)
chr8 (74-505)||(31385606-31386030)
chr8 (18-72)||(31386133-31386187)
chr8 (209-326)||(8618319-8618435)
chr8 (467-505)||(31372325-31372363)
chr8 (211-266)||(2704022-2704076)
chr8 (263-326)||(3664947-3665010)
chr8 (200-318)||(15074354-15074471)
[»] chr3 (7 HSPs)
chr3 (103-356)||(1930002-1930256)
chr3 (210-356)||(53920290-53920435)
chr3 (199-326)||(1527253-1527379)
chr3 (210-332)||(25500951-25501072)
chr3 (285-356)||(8690523-8690594)
chr3 (285-356)||(9042392-9042463)
chr3 (98-174)||(53920173-53920252)
[»] chr6 (2 HSPs)
chr6 (199-356)||(1100943-1101099)
chr6 (232-322)||(28909706-28909796)
[»] scaffold0094 (1 HSPs)
scaffold0094 (98-356)||(15112-15368)
[»] chr7 (3 HSPs)
chr7 (199-326)||(38176242-38176368)
chr7 (104-356)||(42415154-42415407)
chr7 (210-342)||(38195551-38195682)
[»] chr2 (8 HSPs)
chr2 (208-326)||(4318722-4318839)
chr2 (199-326)||(28626356-28626482)
chr2 (74-160)||(29370254-29370340)
chr2 (210-328)||(31015443-31015560)
chr2 (17-70)||(29370097-29370150)
chr2 (209-326)||(34212766-34212882)
chr2 (303-342)||(29370388-29370427)
chr2 (199-321)||(6409582-6409703)
[»] chr5 (2 HSPs)
chr5 (209-326)||(22497645-22497761)
chr5 (210-352)||(12186853-12186994)
[»] chr1 (3 HSPs)
chr1 (209-326)||(46342964-46343080)
chr1 (210-314)||(4816708-4816811)
chr1 (30-70)||(19023626-19023666)
[»] chr4 (1 HSPs)
chr4 (210-326)||(29542204-29542319)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 74 - 505
Target Start/End: Complemental strand, 31386030 - 31385606
Alignment:
Q  74 ttggtagattaggcatgtcaaggttgctcatagaactagactacaagctagtggttgatagcattcttgataggaacaccaatcaagcggagttcggtag 173  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31386030 ttggtagattaggcatgacaaggttgctcagagaactagactgcaagctagtggttgatagcattcttgataggaacaccaatcaaacggagttcggtag 31385931  T
Q  174 ttatatcttatagtgagattctacaacaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcagggg 273  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||    
T  31385930 ttatatcttacagtgagattctacaacaacaaaatacaaactttaagattaagttttgttaggagacaagctaattttgtcactcatactttagca-ggg 31385832  T
Q  274 tgtcaaaataacatgctcgtcaccaagagtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatgannnnnnnnctttctaaa 373  Q
    ||||||||| ||||||| |||| ||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||        | |||||||    
T  31385831 tgtcaaaattacatgcttgtcatcaacagtttgatttgattctatcttgtgttgaaactc-tttgagaaaggaaataatatgattttttttc-ttctaaa 31385734  T
Q  374 aagtaaaagctttctagaaataaaataatatgagnnnnnnnncttnnnnnnnnggaccatgactataaatatttgtctgattggtcnnnnnnngatcatg 473  Q
    ||||||||| |||||||||||| |||||||||          |||        |||||||||||||||||||||||||||||||||       |||||||    
T  31385733 aagtaaaagttttctagaaatacaataatatg----ttttttcttaaaaaaaaggaccatgactataaatatttgtctgattggtcaaaaaaagatcatg 31385638  T
Q  474 actattctatatatatccaacacaattcttac 505  Q
    ||||||||||||||||||||||||||||||||    
T  31385637 actattctatatatatccaacacaattcttac 31385606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 31386187 - 31386133
Alignment:
Q  18 gatggggcaatgtttgaggagcagaggtgctttggaataggtatgtgcattcgag 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31386187 gatggggcaatgtttgaggagcagaggtgctttggaataggtatgtgcattcgag 31386133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 8618435 - 8618319
Alignment:
Q  209 acaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgat 308  Q
    |||||||| ||||| |||||||||||||| |||||| ||| ||||||||||||  |||||| ||||||||| || |||| ||||||||||    || |||    
T  8618435 acaaacttcaagat-aagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagggtgtcaatattacatcctcgtcaccatttcttcgat 8618337  T
Q  309 ttgattctatcttgtatt 326  Q
    ||||||| ||||||||||    
T  8618336 ttgattccatcttgtatt 8618319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 505
Target Start/End: Complemental strand, 31372363 - 31372325
Alignment:
Q  467 gatcatgactattctatatatatccaacacaattcttac 505  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31372363 gatcatgactattccatatatatccaacacaattcttac 31372325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 2704076 - 2704022
Alignment:
Q  211 aaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatatttta 266  Q
    |||||||||||| |||||||||||||| |||||| |||| ||||||||||| ||||    
T  2704076 aaactttaagat-aagttttgttaggagacaagcaaattatgtcgctcatacttta 2704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 3664947 - 3665010
Alignment:
Q  263 tttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatttgattctatcttgtatt 326  Q
    ||||||| |||||||||||| ||| |||||||||||||  ||||||||| ||| || |||||||    
T  3664947 tttagcaagggtgtcaaaattacacgctcgtcaccaagtctttgatttgtttccattttgtatt 3665010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 15074471 - 15074354
Alignment:
Q  200 caacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaa 299  Q
    |||||| || ||||||||||||| |||||||||||| | |||||| |||| ||||||||||| | ||||| ||   |||||||   |||||||||| ||     
T  15074471 caacaaaatccaaactttaagat-aagttttgttagaagacaagcaaattgtgtcgctcatagtatagcaaggacatcaaaattgtatgctcgtcaacat 15074373  T
Q  300 gagtttgatttgattctat 318  Q
       ||||||||||||||||    
T  15074372 atctttgatttgattctat 15074354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 103 - 356
Target Start/End: Original strand, 1930002 - 1930256
Alignment:
Q  103 atagaactagactacaagctagtggttgatagcattcttgataggaacaccaatcaagcggagttcggtagt--tatatcttatagtgagattctacaac 200  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| |  |||||| ||||||| ||||||  ||||||  || || |   |||   ||    
T  1930002 atagaactagattgtaagctagtggttgatagcatagttgataggaatatgaatcaatcggagtttggtagtattatatccgattgtcaagctcttttac 1930101  T
Q  201 aacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaag 300  Q
    || ||||| |||||||||| || |||||||| ||||| | | ||||||| |||| |||||| ||||||||||| ||||| || ||||||||||||||||     
T  1930102 aataacatccaaactttaaaat-aagttttgctaggagaaatgctaattatgtcactcatactttagcaggggcgtcaagattacatgctcgtcaccaac 1930200  T
Q  301 agtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  1930201 agtttgatttgattccatcttgtattgagactcttttgagaaaggaaataatatga 1930256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 53920290 - 53920435
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| | |||||||||| | |||||||||||||||||||||||  |||||  ||| ||| | ||   ||||||||||||||||||||| ||    
T  53920290 caaactttaagatga-gttttgttagaagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccaagagtttgttt 53920388  T
Q  310 tgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    |||||| |||||||||||||||| || |||||||  |||||| ||||    
T  53920389 tgattccatcttgtattgaaactattgtgagaaatgaaataacatga 53920435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 1527253 - 1527379
Alignment:
Q  199 acaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcacca 298  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| ||  ||||||||| ||  || |||||||||||    
T  1527253 acaacaatttacaaactttaagat-aagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca 1527351  T
Q  299 agagtttgatttgattctatcttgtatt 326  Q
    ||  ||||||||||||| ||||||||||    
T  1527352 agtctttgatttgattccatcttgtatt 1527379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 332
Target Start/End: Original strand, 25500951 - 25501072
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| || || ||| |||| |||||| |||| |||||| |||| ||||||| |||  |||||||   |||||||||||| ||  ||| |||    
T  25500951 caaactttaagataaa-ttatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagggcatcaaaattgtatgctcgtcaccgagtctttcatt 25501049  T
Q  310 tgattctatcttgtattgaaact 332  Q
    |||||| ||||||||||||||||    
T  25501050 tgattccatcttgtattgaaact 25501072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 8690523 - 8690594
Alignment:
Q  285 catgctcgtcaccaagagtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    |||||||||||||| | |||||||||||||| ||| ||||||||  || || |||||||  |||||||||||    
T  8690523 catgctcgtcaccaggtgtttgatttgattccatcgtgtattgactctattgtgagaaatgaaataatatga 8690594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 356
Target Start/End: Original strand, 9042392 - 9042463
Alignment:
Q  285 catgctcgtcaccaagagtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    |||||||||||||| | |||||||||||||| ||| ||||||||  || || |||||||  |||||||||||    
T  9042392 catgctcgtcaccaggtgtttgatttgattccatcgtgtattgactctattgtgagaaatgaaataatatga 9042463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 53920173 - 53920252
Alignment:
Q  98 tgctcatagaactagactacaagctagtggttgatagcattcttgataggaa---caccaatcaagcggagttcggtagt 174  Q
    |||| |||||||| || | ||| |||||| ||||||||||| ||||||||||   || ||||||||||||||| ||||||    
T  53920173 tgcttatagaactggattgcaaactagtgtttgatagcatttttgataggaatagcagcaatcaagcggagtttggtagt 53920252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 199 - 356
Target Start/End: Complemental strand, 1101099 - 1100943
Alignment:
Q  199 acaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcacca 298  Q
    |||||||||| ||||||||||||  |||||||| ||||| |||| | |||||||||||||||| ||||| ||||| ||||| || |||||||||||||||    
T  1101099 acaacaacatccaaactttaagaa-aagttttgctaggagacaatcaaattttgtcgctcatactttagtaggggagtcaagattacatgctcgtcacca 1101001  T
Q  299 agagtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    | ||||||||||||||| |||||||||||| |||||||||||||   |||||||||||    
T  1101000 acagtttgatttgattccatcttgtattgagactcttttgagaagtgaaataatatga 1100943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 28909796 - 28909706
Alignment:
Q  232 ttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatttgattctatcttg 322  Q
    |||||| |||||| ||| ||||| |||||| ||| ||  ||||||||| || ||| |||||||||||||  ||||||||||||| ||||||    
T  28909796 ttaggagacaagcgaatgttgtcactcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttgatttgattccatcttg 28909706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 356
Target Start/End: Original strand, 15112 - 15368
Alignment:
Q  98 tgctcatagaactagactacaagctagtggttgatagcattcttgataggaacaccaatcaagcggagttcggtagttatatcttatagt-gagattcta 196  Q
    |||| ||||||||||| | ||| |||||||||||||||||| |||||||||| | ||||||||||||||| |||| | |||||  |  || |    | |     
T  15112 tgcttatagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggta-tcatatccgaatgtcggtcgtgtt 15210  T
Q  197 caacaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcac 296  Q
     || ||||  || |||||||||||| ||||||||||||||| |||||||||||||||||||||||  |||||  ||| ||| | ||   |||||||||||    
T  15211 taa-aacattatccaaactttaaga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcac 15308  T
Q  297 caagagtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    |||||||||||||| |||| || || |||||||||| || |||||||  |||||||||||    
T  15309 caagagtttgatttaattccattttatattgaaactattgtgagaaatgaaataatatga 15368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 199 - 326
Target Start/End: Complemental strand, 38176368 - 38176242
Alignment:
Q  199 acaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcacca 298  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| ||  ||||||||| ||  || |||||||||||    
T  38176368 acaacaatttacaaactttaagat-aagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctagggtgtcaatatttcaagctcgtcacca 38176270  T
Q  299 agagtttgatttgattctatcttgtatt 326  Q
    ||  ||||||||||||| ||||||||||    
T  38176269 agtctttgatttgattccatcttgtatt 38176242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 356
Target Start/End: Original strand, 42415154 - 42415407
Alignment:
Q  104 tagaactagactacaagctagtggttgatagcattcttgataggaacaccaatcaagcggagttcggtag--ttatatcttatagtgagattctacaaca 201  Q
    |||||||||| | ||| |||||||||||||||||| |||||||||| | ||||||||||||||| |||||  | |||||  |  ||  |   |    | |    
T  42415154 tagaactagattgcaaactagtggttgatagcatttttgataggaatagcaatcaagcggagtttggtagtatcatatccgaatgtcggtcgcgtttaaa 42415253  T
Q  202 acaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaaga 301  Q
    |||  || ||||||||| || ||||||||||||||| |||||||||||||||||||||||  |||||  ||| ||| | ||   ||||||||||||| ||    
T  42415254 acattatccaaactttagga-taagttttgttaggagacaagctaattttgtcgctcatacgttagctagggcgtctagattgaatgctcgtcaccagga 42415352  T
Q  302 gtttgatttgattctatcttgtattgaaactcttttgagaaagaaaataatatga 356  Q
    |||||||||||||| ||| | |||||||||| || |||||||  |||||||||||    
T  42415353 gtttgatttgattccatcatatattgaaactattgtgagaaatgaaataatatga 42415407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 342
Target Start/End: Complemental strand, 38195682 - 38195551
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| ||||||  |  ||| |||||| |||| ||||||||||| ||||||  ||| | |||| |  |||||| ||||||||| |||  |||    
T  38195682 caaactttaagat-aagtttcatctggagacaagcaaattatgtcgctcatagtttagctcgggcgacaaagttgcatgctagtcaccaagtgttcaatt 38195584  T
Q  310 tgattctatcttgtattgaaactcttttgagaa 342  Q
    |||||| |||||||||||| ||| |||| ||||    
T  38195583 tgattccatcttgtattgatactattttaagaa 38195551  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 4318839 - 4318722
Alignment:
Q  208 tacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttga 307  Q
    ||||||||||||||| |||||||||||||| |||||  ||| |||||||||||| ||| ||  ||||||||| || ||| |||||||||||||  |||||    
T  4318839 tacaaactttaagat-aagttttgttaggagacaagtaaatgttgtcgctcatagtttcgctagggtgtcaatattacaagctcgtcaccaagtctttga 4318741  T
Q  308 tttgattctatcttgtatt 326  Q
    |||||||| ||||||||||    
T  4318740 tttgattccatcttgtatt 4318722  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 326
Target Start/End: Complemental strand, 28626482 - 28626356
Alignment:
Q  199 acaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcacca 298  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||| ||   |||||||| || ||| |||||||||||    
T  28626482 acaacaatgtacaaactttaagat-aagttttgttaggagacaagcgaatgttgtcgctcatagtttcgctaaggtgtcaatattacaagctcgtcacca 28626384  T
Q  299 agagtttgatttgattctatcttgtatt 326  Q
    ||  ||||||||||||| || |||||||    
T  28626383 agtctttgatttgattccattttgtatt 28626356  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 29370254 - 29370340
Alignment:
Q  74 ttggtagattaggcatgtcaaggttgctcatagaactagactacaagctagtggttgatagcattcttgataggaacaccaatcaag 160  Q
    |||||||||||||| |||||| | |||| ||||||||||| |  ||||||||||||||||||||  |||||||||| || |||||||    
T  29370254 ttggtagattaggcttgtcaaaggtgcttatagaactagattgtaagctagtggttgatagcataattgataggaatactaatcaag 29370340  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 31015560 - 31015443
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| || |||||||||||  ||||| ||||||||| | ||||  ||||||  |||||||  |   |||||||||||||||| ||||||||    
T  31015560 caaactttaagataaa-ttttgttaggaggcaagcaaattttgtcacccatagcttagcaaaggtgtcacgaatgcatgctcgtcaccaagtgtttgatt 31015462  T
Q  310 tgattctatcttgtattga 328  Q
    |||||| ||||||||||||    
T  31015461 tgattccatcttgtattga 31015443  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 29370097 - 29370150
Alignment:
Q  17 agatggggcaatgtttgaggagcagaggtgctttggaataggtatgtgcattcg 70  Q
    ||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  29370097 agatgcggcgatgtttgaggagcagaggtgttttggtataggtatgtgcattcg 29370150  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 326
Target Start/End: Original strand, 34212766 - 34212882
Alignment:
Q  209 acaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgat 308  Q
    |||||||||||||| || ||||||||||| |||||| ||| |||||||| |||  |||||| | ||||||| || ||||| || |||||| |  ||||||    
T  34212766 acaaactttaagataaa-ttttgttaggagacaagcgaatgttgtcgcttatagcttagcaagagtgtcaatattacatgttcctcaccatgtctttgat 34212864  T
Q  309 ttgattctatcttgtatt 326  Q
    ||||||| ||||| ||||    
T  34212865 ttgattccatcttatatt 34212882  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 29370388 - 29370427
Alignment:
Q  303 tttgatttgattctatcttgtattgaaactcttttgagaa 342  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  29370388 tttgattagattctatcttgtattgaaactcttttgagaa 29370427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 321
Target Start/End: Original strand, 6409582 - 6409703
Alignment:
Q  199 acaacaacatacaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcacca 298  Q
    |||||||  |||||| |||||||| |||||||||||||| | |||| ||| ||||||||| || ||| ||  | ||||||| || ||| |||||||||||    
T  6409582 acaacaatttacaaattttaagat-aagttttgttaggagagaagcgaatattgtcgctcgtagtttcgctagagtgtcaatattacaagctcgtcacca 6409680  T
Q  299 agagtttgatttgattctatctt 321  Q
    ||  ||| ||||||||| |||||    
T  6409681 agtctttaatttgattccatctt 6409703  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 22497761 - 22497645
Alignment:
Q  209 acaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgat 308  Q
    |||||||||||||| |||||||||||||| |||||| ||| ||||| ||||||  |||||| ||||||||| || ||||||||||||||  |  ||||||    
T  22497761 acaaactttaagat-aagttttgttaggagacaagcgaatgttgtcactcataacttagcaagggtgtcaatattacatgctcgtcaccgtgtctttgat 22497663  T
Q  309 ttgattctatcttgtatt 326  Q
    |||||||  |||||||||    
T  22497662 ttgattccttcttgtatt 22497645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 352
Target Start/End: Original strand, 12186853 - 12186994
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| ||||||||||||||  ||||| ||||  ||||| ||||  ||||||  |||||||      |||||||||||||||| ||||||||    
T  12186853 caaactttaagat-aagttttgttaggaggcaagcgaattccgtcgcccatagcttagcaaaggtgtcacggatgcatgctcgtcaccaagtgtttgatt 12186951  T
Q  310 tgattctatcttgtattgaaactcttttgagaaagaaaataat 352  Q
    |||||| ||||||||||||  || || ||||||| ||||||||    
T  12186952 tgattccatcttgtattgactctattgtgagaaataaaataat 12186994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 326
Target Start/End: Original strand, 46342964 - 46343080
Alignment:
Q  209 acaaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgat 308  Q
    ||||||| |||||| |||||||||||||| |||||| ||| ||||||||||||| |||||| || |||||| || ||||| | |||||||    ||||||    
T  46342964 acaaactctaagat-aagttttgttaggagacaagcgaatgttgtcgctcatatcttagcaaggatgtcaatattacatgttggtcaccatatctttgat 46343062  T
Q  309 ttgattctatcttgtatt 326  Q
    ||||||  ||||||||||    
T  46343063 ttgatttcatcttgtatt 46343080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 4816708 - 4816811
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| || || ||| |||| |||||| |||| |||||| ||||  |||||| ||| ||||||||   |||||||||||||||  |||||||    
T  4816708 caaactttaagataaa-ttatgtaaggagacaagcaaattatgtcgcccatagcttagcaagggagtcaaaattgtatgctcgtcaccaagtctttgatt 4816806  T
Q  310 tgatt 314  Q
    |||||    
T  4816807 tgatt 4816811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 19023666 - 19023626
Alignment:
Q  30 tttgaggagcagaggtgctttggaataggtatgtgcattcg 70  Q
    ||||||||||| ||| ||||||| |||||||||||||||||    
T  19023666 tttgaggagcaaaggagctttggtataggtatgtgcattcg 19023626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 29542204 - 29542319
Alignment:
Q  210 caaactttaagattaagttttgttaggaaacaagctaattttgtcgctcatattttagcaggggtgtcaaaataacatgctcgtcaccaagagtttgatt 309  Q
    ||||||||||||| || ||||||||||| |||||| |||| |||||| |||   |||||  ||| ||||||||   | ||||||||||| |  |||||||    
T  29542204 caaactttaagataaa-ttttgttaggatacaagcaaattatgtcgcccatggcttagctagggagtcaaaattgtacgctcgtcaccatgtttttgatt 29542302  T
Q  310 tgattctatcttgtatt 326  Q
     ||||| ||||||||||    
T  29542303 cgattccatcttgtatt 29542319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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