View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_low_13 (Length: 442)
Name: NF16508_low_13
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_13 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 43071082 - 43071500
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
43071082 |
gacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaag |
43071181 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43071182 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
43071281 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
43071282 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
43071381 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
43071382 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
43071481 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43071482 |
aaagattagatataagtat |
43071500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 1262510 - 1262091
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
1262510 |
gacggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttcgagtaaaag |
1262411 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtggagtc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
1262410 |
caatatgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtggagtc |
1262311 |
T |
|
| Q |
216 |
aatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgat |
313 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||| |
|
|
| T |
1262310 |
aatttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggat |
1262211 |
T |
|
| Q |
314 |
gagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaa |
413 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
1262210 |
gagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa |
1262111 |
T |
|
| Q |
414 |
taaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1262110 |
caaagattagatataagtat |
1262091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 113 - 433
Target Start/End: Original strand, 48849601 - 48849925
Alignment:
| Q |
113 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa--tgaaggagaaagaggtggacatagataagtgtg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
48849601 |
aaaagcaatctgaattccaacacataaagaaggaataatgggagatgagagaagagaacttaaaaaatgaaggagaaagaggtgaacatcgataagtgtg |
48849700 |
T |
|
| Q |
211 |
gagtcaatttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaa |
308 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
48849701 |
gagtcaatttgggaatttgaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaa |
48849800 |
T |
|
| Q |
309 |
atgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaat |
408 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||| |
|
|
| T |
48849801 |
aggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttaggtttaggatttacaaagtcattagcaat |
48849900 |
T |
|
| Q |
409 |
gttaataaagattagatataagtat |
433 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
48849901 |
gttaacaaagattagatataagtat |
48849925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 140 - 433
Target Start/End: Original strand, 26909806 - 26910099
Alignment:
| Q |
140 |
agaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataat |
237 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
26909806 |
agaaggaataatgggagaggagaaaagagaacgttaaaaatgaaggagaaaaaggtgggcatggataagtgtggagtcaatctgggaattggaggataat |
26909905 |
T |
|
| Q |
238 |
taatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaaatg |
335 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
26909906 |
----gagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatg |
26910001 |
T |
|
| Q |
336 |
atgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
26910002 |
ataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgcaaagttattagcaatgttaacaaagattagatataagtat |
26910099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 48849482 - 48849565
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
101 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48849482 |
gacggagaaagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaga |
48849565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 22007416 - 22007347
Alignment:
| Q |
360 |
tttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataa |
429 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
22007416 |
tttggagccaaaaccatttagatttagggtttgtaaagtcattagcaatgttaacaaaaattagatataa |
22007347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 23348680 - 23349098
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
23348680 |
gacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaag |
23348779 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23348780 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
23348879 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
23348880 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
23348979 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
23348980 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
23349079 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23349080 |
aaagattagatataagtat |
23349098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 435
Target Start/End: Complemental strand, 12742107 - 12741687
Alignment:
| Q |
20 |
cggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagca |
119 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
12742107 |
cggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagca |
12742008 |
T |
|
| Q |
120 |
atctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12742007 |
atctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaat |
12741908 |
T |
|
| Q |
219 |
ttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgag |
316 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
12741907 |
ttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatgag |
12741808 |
T |
|
| Q |
317 |
atgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataa |
416 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| || |
|
|
| T |
12741807 |
atgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaacaa |
12741708 |
T |
|
| Q |
417 |
agattaga--tataagtataa |
435 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
12741707 |
agattagatgtataagtataa |
12741687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 18355013 - 18355431
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
18355013 |
gacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgagatggaagatgaacaactcaaagggcgaagagatttttttgagtaaaag |
18355112 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18355113 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
18355212 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||| |||| |
|
|
| T |
18355213 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaaggatg |
18355312 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
18355313 |
agatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
18355412 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
18355413 |
aaagattaaatataagtat |
18355431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 47 - 433
Target Start/End: Original strand, 10328626 - 10329010
Alignment:
| Q |
47 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
146 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaagcaatctaaattccaacacataaagaagga |
10328725 |
T |
|
| Q |
147 |
ataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaatgagt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10328726 |
ataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaattggaggataattaatgagt |
10328825 |
T |
|
| Q |
246 |
caaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatc-aaatgatgagatgcatggttagccaaatgatgagat |
342 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||||| ||||||||||| | ||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
10328826 |
caaaacttggataagtgcataggaa------atcaaattttcaaatttgactcagattagatcaaaaggatgagatgcatgcttagccaaatgatgagat |
10328919 |
T |
|
| Q |
343 |
ccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |||||| ||||| ||||| || |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
10328920 |
ccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatttcattagcaatgttaacaaagattagatataagtat |
10329010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 263 - 430
Target Start/End: Original strand, 1615863 - 1616029
Alignment:
| Q |
263 |
taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgtttt |
362 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||| ||| |
|
|
| T |
1615863 |
taggaaatatacatcaaatttgaaagtttgactcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttg-ttt |
1615961 |
T |
|
| Q |
363 |
ggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataag |
430 |
Q |
| |
|
||||| ||||||||||||||||| | || |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1615962 |
ggagcaaaaaccatttagatttaatggttacaaagtcattaacaatgttaacaaagattggatataag |
1616029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 433
Target Start/End: Complemental strand, 24454688 - 24454518
Alignment:
| Q |
263 |
taggaaatatacatcaaatttgaaaatttgac-tcggcttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttt |
361 |
Q |
| |
|
||||||| | ||||||||||||||| ||||| || | |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
24454688 |
taggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgttt |
24454589 |
T |
|
| Q |
362 |
tggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|| ||| ||| |||||| ||||| |||| || | ||| |||||||||| |||||||||||||||||| |
|
|
| T |
24454588 |
-ggcgcctaaaaaatttaggtttaggatttgcaatggtcttagcaatgttaattaagattagatataagtat |
24454518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 9044223 - 9043805
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||| |
|
|
| T |
9044223 |
gacggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagaaatttttttgagtaaaag |
9044124 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9044123 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
9044024 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| | |||||||||| |||| |
|
|
| T |
9044023 |
atttgggaattggaggataattaatgagtcaaaacttggataaatgcataggaaatatacatcaaatttaaaaatttgactcagattagatcaaaggatg |
9043924 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
9043923 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
9043824 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9043823 |
aaagattagatataagtat |
9043805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 7473189 - 7473607
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
7473189 |
gacggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaag |
7473288 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7473289 |
caatctaaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
7473388 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
7473389 |
atttgggaattggaggataactaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
7473488 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
7473489 |
agatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
7473588 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7473589 |
aaagattagatataagtat |
7473607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 30442247 - 30442662
Alignment:
| Q |
19 |
acggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
30442247 |
acggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaag |
30442346 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaactt-aaaatgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30442347 |
caatctgaattccaacacataaagaaggaataatgagagtggagagaagagaactttaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
30442446 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
30442447 |
atttgggaattggaggataattaatgagtcaaaacttggaaaagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
30442546 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
30442547 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
30442646 |
T |
|
| Q |
415 |
aaagattagatataag |
430 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30442647 |
aaagattagatataag |
30442662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 137 - 433
Target Start/End: Original strand, 22009359 - 22009646
Alignment:
| Q |
137 |
taaagaaggaataatgggagaggagagaagagaactt--aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggat |
234 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||| |||||||||| |||| | ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
22009359 |
taaagaaggaataatgggagaggagagaacagaaagttgaaaaggaaggagaaaaaggttggcatcgataagtgtggagtcaatttgggaattggag--- |
22009455 |
T |
|
| Q |
235 |
aattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaa |
332 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| |||||||| |
|
|
| T |
22009456 |
----------tcaaaacttggataagagcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaa |
22009545 |
T |
|
| Q |
333 |
atgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagta |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
22009546 |
atgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaattcattagcaatgttaacaaagattagatataagta |
22009645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 26840988 - 26841074
Alignment:
| Q |
339 |
agatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagat |
425 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||| ||||||||||| |
|
|
| T |
26840988 |
agatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagattagat |
26841074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 360 - 438
Target Start/End: Original strand, 19085422 - 19085500
Alignment:
| Q |
360 |
tttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtataatgt |
438 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| |||||||| |||||||||| |||| |
|
|
| T |
19085422 |
tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgatgt |
19085500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 430
Target Start/End: Original strand, 22004442 - 22004571
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||| ||| ||| | ||||||||||||||||||||||| | ||||| |||| ||| |||| || ||| ||||| ||||| ||| || |
|
|
| T |
22004442 |
ttagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttg-attggcgcctaaactatctaggtttagggtttgcaaaatc |
22004540 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataag |
430 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |
|
|
| T |
22004541 |
attagcaatgttaacaaagattagatataag |
22004571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 19085182 - 19085241
Alignment:
| Q |
174 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
233 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | |||||||||||| |
|
|
| T |
19085182 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgggaattggagga |
19085241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 19881811 - 19882225
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
19881811 |
gacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagatttttttgagtaaaag |
19881910 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
19881911 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagataacttaaaaatgaaggagaaagaggtggacatcgataaatgtggagtca |
19882010 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
19882011 |
atttgggaattggaggataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
19882110 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| || |||||| ||||||||| |
|
|
| T |
19882111 |
agatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaatttcattagcaatgttaac |
19882210 |
T |
|
| Q |
415 |
aaagattagatataa |
429 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19882211 |
aaagattagatataa |
19882225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 53972986 - 53973404
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
53972986 |
gacggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaag |
53973085 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53973086 |
caatctgaattccaacacataaagaatgaataatgggagaggagagaagaaaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
53973185 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
53973186 |
atttgagaattggaggataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
53973285 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
53973286 |
agatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
53973385 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53973386 |
aaagattagatataagtat |
53973404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 37982773 - 37982343
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||| |
|
|
| T |
37982773 |
gacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcagagggcgaagagatttttttgagtaaaag |
37982674 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37982673 |
caatctgaattccaaaacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
37982574 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataa---gtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatg |
311 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| | |||||| ||| | |
|
|
| T |
37982573 |
atttgggaattggaggataattaatgagtcaaaacttggataagacgtgcataggaaatatacatcaaatttgaaaatttgactcagattagattaaagg |
37982474 |
T |
|
| Q |
312 |
atgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgtt |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| || |||||| ||||||| |
|
|
| T |
37982473 |
atgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagcaatgtt |
37982374 |
T |
|
| Q |
412 |
aataaagattagatataagtataatgtaccc |
442 |
Q |
| |
|
|| ||||||||||||||||||| || ||||| |
|
|
| T |
37982373 |
aacaaagattagatataagtatgatttaccc |
37982343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 433
Target Start/End: Complemental strand, 31685474 - 31685080
Alignment:
| Q |
43 |
aattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnn-gagaaaaagcaatctgaattccaacacataaag |
141 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
31685474 |
aattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggcgaagagattttttttgagtaaaagcaatttgaattccaacacataaag |
31685375 |
T |
|
| Q |
142 |
aaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaa |
240 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31685374 |
aaggaataatggaagaggagagaaaagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgagaattggaggataattaa |
31685275 |
T |
|
| Q |
241 |
tgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaaatgatg |
338 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
31685274 |
tgagtcaaaacttgaataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttagccaaatgatg |
31685175 |
T |
|
| Q |
339 |
agatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31685174 |
agattcaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaagattagatataagtat |
31685080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 265 - 433
Target Start/End: Complemental strand, 17681938 - 17681770
Alignment:
| Q |
265 |
ggaaatatacatcaaatttgaaaatttgactcg-gcttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttg |
363 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| | |||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
17681938 |
ggaaatatacattaaatttaaaaatttgactcaagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgttt-g |
17681840 |
T |
|
| Q |
364 |
gagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17681839 |
gagccaaaaccatttaggtttagggtttgcaaaatcattaacaatgttaacaaagattagatataagtat |
17681770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 304 - 433
Target Start/End: Complemental strand, 2550068 - 2549940
Alignment:
| Q |
304 |
atcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcatta |
403 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
2550068 |
atcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagtcatta |
2549970 |
T |
|
| Q |
404 |
acaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
2549969 |
gcaatgttaattaagattagatataagtat |
2549940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 12538621 - 12538753
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| || |
|
|
| T |
12538621 |
ttagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccatttaggtttagggtttgcaaaatc |
12538719 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| || ||||| ||||||||||||||||||| |
|
|
| T |
12538720 |
attagaaaggttaacaaagattagatataagtat |
12538753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 24761883 - 24762016
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
24761883 |
ttagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagtc |
24761982 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||| |
|
|
| T |
24761983 |
attagcaatgttaagaaggattagatataagtat |
24762016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 300 - 433
Target Start/End: Complemental strand, 24816051 - 24815918
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
24816051 |
ttagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtc |
24815952 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| ||||||||| || |||||||||||||||| |
|
|
| T |
24815951 |
attagcaatgttaagaaggattagatataagtat |
24815918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 300 - 433
Target Start/End: Original strand, 53027737 - 53027870
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||||||||||||| | | | |||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
53027737 |
ttagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcattttggagtcaaaaccatttaggtttagggtttgtaaagtt |
53027836 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| || |||||| || |||||||||||||||| |
|
|
| T |
53027837 |
attagcagtgttaagaaggattagatataagtat |
53027870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 304 - 433
Target Start/End: Original strand, 53352750 - 53352879
Alignment:
| Q |
304 |
atcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcatta |
403 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||||||||||| | | | ||||||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
53352750 |
atcaaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttaggtttagagtttgcaaagtcatta |
53352849 |
T |
|
| Q |
404 |
acaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
||||||||| || |||||||||||||||| |
|
|
| T |
53352850 |
gcaatgttaagaaggattagatataagtat |
53352879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 1075 - 657
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
1075 |
gacggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatgaacaactcaaagggagaagagatttttttgagtaaaag |
976 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
975 |
caatttgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
876 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
875 |
atttgggaattgaatgataattaatgagtcaaaatttggataagtgcataggaaatatacatcaaatttgaaaatttgactcagattagatcaaaggatg |
776 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| || |||||| ||||||||| |
|
|
| T |
775 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccatttaggtttagggtttgcaatttcattagcaatgttaac |
676 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
675 |
aaagatcagatataagtat |
657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 14677722 - 14678139
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||| |
|
|
| T |
14677722 |
gacggagagagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaag |
14677821 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14677822 |
caatctgaatttcaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtggacat-gataagtgtggagtca |
14677920 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
14677921 |
atttgggaattggatgataattaatgagtcaaaacttggataagtgcataggaaatatacattaaatttgaaagtttgactcagattagatcaaaggatg |
14678020 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
14678021 |
agatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaagtcattagcaatgttaac |
14678120 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14678121 |
aaagattagatataagtat |
14678139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 42 - 433
Target Start/End: Complemental strand, 5658168 - 5657774
Alignment:
| Q |
42 |
gaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaag |
141 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
5658168 |
gaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaattccaacacataaag |
5658069 |
T |
|
| Q |
142 |
aaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggaggataattaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5658068 |
aaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtcaatttgggaattggaggataattaa |
5657969 |
T |
|
| Q |
241 |
tgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaaatgatg |
338 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
5657968 |
tgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgcttaaccaaatgatg |
5657869 |
T |
|
| Q |
339 |
agatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||||| |
|
|
| T |
5657868 |
agatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtat |
5657774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 31100572 - 31100990
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
||||||||||| ||| ||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| |
|
|
| T |
31100572 |
gacggagagagtggcgacggcaaagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaagggggaagagatttttttgagtaaaag |
31100671 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
31100672 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcgataagtgtggagtca |
31100771 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
31100772 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatg |
31100871 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
|||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||| |
|
|
| T |
31100872 |
agatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaagtcattagcaatgttaac |
31100971 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
31100972 |
aaagattagatataagtat |
31100990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 263 - 433
Target Start/End: Original strand, 27541507 - 27541676
Alignment:
| Q |
263 |
taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgtttt |
362 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || | |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
27541507 |
taggaaatatacatcaaatttgaaagtttgattcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttg-ttt |
27541605 |
T |
|
| Q |
363 |
ggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27541606 |
ggagccaaagccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtat |
27541676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 33689028 - 33689215
Alignment:
| Q |
47 |
ttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaattccaacacataaagaagga |
146 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
33689028 |
ttgtttgaatgtctaagagtgaggtggaagatgaacaactcaaaggg-gaagagatttttttgagtaaaagcaatctgaattccaaaaagtaaagaagga |
33689126 |
T |
|
| Q |
147 |
ataatgggagaggagagaagagaac-ttaa-aatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
233 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||| | | |||||||||| |
|
|
| T |
33689127 |
ataatgggagaggagagaagagaacgttaacaatgaaggagaaagaggtgggtatggataagtgtggagtcaatatggaaattggagga |
33689215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 433
Target Start/End: Original strand, 24788079 - 24788151
Alignment:
| Q |
361 |
ttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| |||||||| | |||| ||||| ||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24788079 |
ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtat |
24788151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 433
Target Start/End: Complemental strand, 23738731 - 23738660
Alignment:
| Q |
361 |
ttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||||||||||| | ||||| |||| ||||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
23738731 |
ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtat |
23738660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 29863061 - 29863479
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||| |
|
|
| T |
29863061 |
gacggagagagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaagagatttttttgagtaaaag |
29863160 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29863161 |
caatctgaattctaacacataaagaaggaataatgggagaggagataagagaactaaaaaatgaaggagaaagaggtggacatcgataagtgtggagtca |
29863260 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
29863261 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataagaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatg |
29863360 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| | ||||||||| |
|
|
| T |
29863361 |
agatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagcaatgttaac |
29863460 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29863461 |
aaagattagatataagtat |
29863479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Complemental strand, 12506497 - 12506439
Alignment:
| Q |
375 |
atttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||||| ||||| |||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
12506497 |
atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtat |
12506439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 429
Target Start/End: Original strand, 33045141 - 33045545
Alignment:
| Q |
28 |
gcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaatctgaat |
127 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
33045141 |
gcggcgacgacaaagaattttgtttgaatgtctgagagtgaggttgaagatgaacaactcaaagggggaagagatttttttgagtaaaagcaatctgaat |
33045240 |
T |
|
| Q |
128 |
tccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaat |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33045241 |
tccaacacataaagaaggaataatgggagaggagacaagagaacttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaatttgggaat |
33045340 |
T |
|
| Q |
227 |
tggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagatgcatgg |
324 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||| |
|
|
| T |
33045341 |
tggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatgagatgcatgc |
33045440 |
T |
|
| Q |
325 |
ttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattaga |
424 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
33045441 |
ttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattaga |
33045540 |
T |
|
| Q |
425 |
tataa |
429 |
Q |
| |
|
||||| |
|
|
| T |
33045541 |
tataa |
33045545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 10092908 - 10092515
Alignment:
| Q |
22 |
gagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaagcaat |
121 |
Q |
| |
|
||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||| |
|
|
| T |
10092908 |
gagagagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaacttaaaggg--aagagatttttttgagtaaaagcaat |
10092811 |
T |
|
| Q |
122 |
ctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtcaattt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10092810 |
ttgaattccaacacataaagaaggaataatgggagaggagagaa-----cttaaaaatgaaggagaaagaggtggacatcgataagtgtggagtcaattt |
10092716 |
T |
|
| Q |
221 |
aggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatgagat |
318 |
Q |
| |
|
| ||||||||||||| |||||| |||||| ||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
10092715 |
ggaaattggaggataactaatgaatcaaaacttggataggtgcataggaaatatacatcaaatttgaaagtttg--------------aaagaatgagat |
10092630 |
T |
|
| Q |
319 |
gcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaag |
418 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
10092629 |
gcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaacaatgttaacaaag |
10092530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 300 - 429
Target Start/End: Complemental strand, 8976540 - 8976411
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8976540 |
ttagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagtc |
8976441 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataa |
429 |
Q |
| |
|
|||| |||| |||| ||||||||||||||| |
|
|
| T |
8976440 |
attagcaatattaacaaagattagatataa |
8976411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 325 - 433
Target Start/End: Complemental strand, 3065808 - 3065701
Alignment:
| Q |
325 |
ttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattaga |
424 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||||| |||||||||| | ||||||| |||||||||| |
|
|
| T |
3065808 |
ttagccaaatgatgagatccaacggtctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattaga |
3065710 |
T |
|
| Q |
425 |
tataagtat |
433 |
Q |
| |
|
||||||||| |
|
|
| T |
3065709 |
tataagtat |
3065701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 22001013 - 22001096
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagaga |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
22001013 |
gacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatgaacaactcaaagggggaagaga |
22001096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 360 - 429
Target Start/End: Original strand, 30908414 - 30908483
Alignment:
| Q |
360 |
tttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataa |
429 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
30908414 |
tttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagattagatataa |
30908483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 16246778 - 16246705
Alignment:
| Q |
360 |
tttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
16246778 |
tttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtat |
16246705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 30908174 - 30908233
Alignment:
| Q |
174 |
aaaatgaaggagaaagaggtggacatagataagtgtggagtcaatttaggaattggagga |
233 |
Q |
| |
|
|||||| ||||||||||||||| || |||||||||||||||||| | ||||||||||| |
|
|
| T |
30908174 |
aaaatggaggagaaagaggtgggtatcgataagtgtggagtcaatatgagaattggagga |
30908233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 35482 - 35066
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || || ||| ||||| |
|
|
| T |
35482 |
gacggagagagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatgaacaactcaaaggggaaaacgatttttttgagtaaaag |
35383 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||| | |
|
|
| T |
35382 |
caatctgaattccaactcataaagaaggaataatgggagaggagag--gagaacttaaaaatgaaggagaaaaaggtggacatcgataagtgtggagtta |
35285 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
35284 |
atttgggaattggaggataattaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattagatcaaaggatg |
35185 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
35184 |
agatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaac |
35085 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35084 |
aaagattagatataagtat |
35066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 11334 - 11752
Alignment:
| Q |
18 |
gacggagagagcggcaacgacagcgaattttgtatgaatgtctgagagtgaggtggaagataaacaactcaaagggcgaagagannnnnnngagaaaaag |
117 |
Q |
| |
|
|||||||||||||| || ||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||| || ||| ||||| |
|
|
| T |
11334 |
gacggagagagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatgaacaactcaaagggggaagggatttgtttgagtaaaag |
11433 |
T |
|
| Q |
118 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaa-tgaaggagaaagaggtggacatagataagtgtggagtca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11434 |
caatctgaattccaacacataaagaaggaataatgggagaggagagaagagaacttaaaaatgaaggagaaagaggtgggcatcaataagtgtggagtca |
11533 |
T |
|
| Q |
217 |
atttaggaattggaggataattaatgagtcaaaatttggataagtg--taggaaatatacatcaaatttgaaaatttgactcggcttagatcaaatgatg |
314 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| | ||| |||||| |||| |
|
|
| T |
11534 |
atttgggaattggaggataatgaatgagtcaaaacttggataagtgcataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaaggatg |
11633 |
T |
|
| Q |
315 |
agatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaat |
414 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
11634 |
agatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagcaatgttaac |
11733 |
T |
|
| Q |
415 |
aaagattagatataagtat |
433 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11734 |
aaagattagatataagtat |
11752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 300 - 433
Target Start/End: Complemental strand, 27545 - 27413
Alignment:
| Q |
300 |
ttagatcaaatgatgagatgcatggttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagagtttgtaaagtc |
399 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| || |
|
|
| T |
27545 |
ttagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccatttaggtttagggtttgcaaaatc |
27447 |
T |
|
| Q |
400 |
attaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |
|
|
| T |
27446 |
attagcaatgttaacaaagattagatataagtat |
27413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 50990983 - 50990911
Alignment:
| Q |
360 |
tttggagccaaaaccatttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagta |
432 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||||| || | ||||||||| |||||||||||||||||| |
|
|
| T |
50990983 |
tttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagta |
50990911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 13980 - 14038
Alignment:
| Q |
375 |
atttagatttagagtttgtaaagtcattaacaatgttaataaagattagatataagtat |
433 |
Q |
| |
|
|||||| ||||| |||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
13980 |
atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtat |
14038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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