View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_low_16 (Length: 409)

Name: NF16508_low_16
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_low_16
NF16508_low_16
[»] chr4 (4 HSPs)
chr4 (19-391)||(52910165-52910532)
chr4 (329-391)||(52012771-52012833)
chr4 (337-393)||(33249488-33249544)
chr4 (340-384)||(49998486-49998530)
[»] chr3 (5 HSPs)
chr3 (337-393)||(47426351-47426407)
chr3 (337-393)||(44380255-44380311)
chr3 (329-391)||(47186168-47186230)
chr3 (337-391)||(50934501-50934555)
chr3 (338-391)||(32319481-32319534)
[»] scaffold0263 (1 HSPs)
scaffold0263 (328-384)||(23085-23141)
[»] chr8 (1 HSPs)
chr8 (337-393)||(41179677-41179733)
[»] chr2 (2 HSPs)
chr2 (339-391)||(7381695-7381747)
chr2 (335-368)||(41096208-41096241)
[»] scaffold0032 (1 HSPs)
scaffold0032 (337-391)||(34195-34249)
[»] chr5 (2 HSPs)
chr5 (337-391)||(19357377-19357431)
chr5 (331-391)||(38010730-38010790)
[»] chr1 (2 HSPs)
chr1 (337-391)||(29119440-29119494)
chr1 (337-389)||(46435571-46435623)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 52910532 - 52910165
Alignment:
Q  19 tacaatgctttccatttctctctttagtttcttcatttcaaatcatttctccctttagtttcataatactttcaaagactgaagcatcgtttccatgcgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52910532 tacaatgctttccatttctctctttagtttcttcatttcaaatcatttctccctttagtttcataatactttcaaagactgaagcatcgtttccatgcgt 52910433  T
Q  119 tcctttcattcttttttgaaatatatttagaagtttcaaaaacaaaattctacataaattcatcataacgtaggaaaagttacatttatctcctttaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52910432 tcctttcattcttttttgaaatatatttagaagtttcaaaaacaaaattctacataaattcatcataacgtaggaaaagttacatttatctcctttaaag 52910333  T
Q  219 cctattaaaatgatatttacacatcctttagttttaaacttgcgcaatataattggttttgctcgcactagaagccgtctctcgtcactaccnnnnnnnn 318  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||            
T  52910332 cctattaaaatgatatttacacatcctttagttttaaacttgcacaatataattggttttgctcgcactagaagccgtctctcgtcactaccaaaaaaa- 52910234  T
Q  319 nnncaaagaaagggacaacacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
        ||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  52910233 ----aaaaaaagggataacacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtg 52910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 52012771 - 52012833
Alignment:
Q  329 agggacaacacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    ||||||| |||||||||||||| | ||||||||| |||||||  |||| ||||| ||||||||    
T  52012771 agggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtg 52012833  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 33249544 - 33249488
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtgtc 393  Q
    |||||||||||||| | ||||| |||  ||||||| |||||||||||| ||||||||    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtc 33249488  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 49998486 - 49998530
Alignment:
Q  340 ttgtgtaccataatggtaccaatattatatactattggccaatta 384  Q
    ||||||||||| | |||||||||||||||||  ||||||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaatta 49998530  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 47426351 - 47426407
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtgtc 393  Q
    |||||||||||||| | |||||||||| ||||||| |||||||||||| ||||||||    
T  47426351 cacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtc 47426407  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 44380255 - 44380311
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtgtc 393  Q
    |||||||||||||| | |||||||||  |||||||||||| ||||||| ||||||||    
T  44380255 cacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtc 44380311  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 47186168 - 47186230
Alignment:
Q  329 agggacaacacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    ||||||| |||||||||||||| | ||||||||| |||||||  |||||||||| | ||||||    
T  47186168 agggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtg 47186230  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 50934501 - 50934555
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    |||||||||||||| | |||||||||  ||||||| |||||||||||| ||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtg 50934555  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 32319534 - 32319481
Alignment:
Q  338 acttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    ||||||||||||| | |||||||||  ||||||| |||||||||||| ||||||    
T  32319534 acttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtg 32319481  T

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Target: scaffold0263 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 23085 - 23141
Alignment:
Q  328 aagggacaacacttgtgtaccataatggtaccaatattatatactattggccaatta 384  Q
    |||||| |||||||||||| ||| | |||||||||  ||||||||||||||||||||    
T  23085 aagggataacacttgtgtatcattaaggtaccaatggtatatactattggccaatta 23141  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 41179733 - 41179677
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtgtc 393  Q
    |||||||||||||| | |||||||||  ||||||  |||||||||||||||||||||    
T  41179733 cacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtc 41179677  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 391
Target Start/End: Original strand, 7381695 - 7381747
Alignment:
Q  339 cttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    |||||||||||| | |||||||||  |||||||||||||||||||| ||||||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtg 7381747  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 41096241 - 41096208
Alignment:
Q  335 aacacttgtgtaccataatggtaccaatattata 368  Q
    |||||||||||||||||||||||||||| |||||    
T  41096241 aacacttgtgtaccataatggtaccaatgttata 41096208  T

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Target: scaffold0032 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 34195 - 34249
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    |||||||||||||| | |||||||||  |||||| ||||||||||||| ||||||    
T  34195 cacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtg 34249  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 19357431 - 19357377
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    |||||||||||||| | |||||||||  ||||||| |||||||||||| ||||||    
T  19357431 cacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtg 19357377  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 38010790 - 38010730
Alignment:
Q  331 ggacaacacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    ||||| |||||||||||||| | ||||||||| |||||||  |||||||||| | ||||||    
T  38010790 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtg 38010730  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 29119494 - 29119440
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtgtg 391  Q
    |||||||||||||| | |||||||||  ||||||| |||||||||||| ||||||    
T  29119494 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtg 29119440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 46435623 - 46435571
Alignment:
Q  337 cacttgtgtaccataatggtaccaatattatatactattggccaattaaagtg 389  Q
    |||||||||||||| | |||||||||  ||||||| |||||||||||| ||||    
T  46435623 cacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

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