View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_17 (Length: 398)
Name: NF16508_low_17
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 1666203 - 1665840
Alignment:
| Q |
17 |
ataagctagttgaattagtttatnnnnnnngccaaacacaataagctagcttaaagtaaaattattgaaaggataattgaattgttagttactaaccact |
116 |
Q |
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| T |
1666203 |
ataagctagttgaattagtttattaaaaaagccaaacacaataagctagcttaaagtaaaattagtgaaaggataattgaattgttagttactaaccact |
1666104 |
T |
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| Q |
117 |
gattgaggtgcaaacttggaattggaactcgctgaaaagatattggagaagaaggttttagtgaaggagtttggaaaatgaaatagagagtgttgaaatg |
216 |
Q |
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| T |
1666103 |
gattgaggtgcaaacttggaattggaactcgctgaaaagatattggagaagaaggttttagtgaaggagtttggaaaatgaaatagagagtgttgaaatg |
1666004 |
T |
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| Q |
217 |
aaacaaacttaccttgaatgtgaacaagattggtaccggttaaatttaaaccggcactaagctgaaatgcactgcccatttcgaacacaaccactggtcg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1666003 |
aaacaaacttaccttgaatgtgaacaagattggtaccggttaaatttaaaccggcactaagctgaaatgcactgcccatttcgaacacaaccactggtcg |
1665904 |
T |
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| Q |
317 |
gagtgaggagtgaattgaaaagattttatatattttagaaataactagtgataatttatcgaac |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1665903 |
gagtgaggagtgaattgaaaagattttatatattttagaaataactagtgataatttatcgaac |
1665840 |
T |
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