View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_20 (Length: 368)
Name: NF16508_low_20
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 39439280 - 39439595
Alignment:
| Q |
15 |
cagagacgtcttccatcagaagtgtaagtgctatagagataaataatcccataacagtaaagaactaaattgagtgagagattgtttagtttgttacccc |
114 |
Q |
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| T |
39439280 |
cagagacgtcttcgatcagaagtgtaagtgctatagagataaataatcccataacagtagagaactaaattgagtgagagattgtttagtttgttacccc |
39439379 |
T |
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| Q |
115 |
aaccaacggaaatgcgatgagaatgaacgagttttggacaggtttgatgagtgatttgggcaaagtatgaggacaaatagctgcagcaacaaacaaagca |
214 |
Q |
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| T |
39439380 |
aaccaacggaaatgcgacgagaatgaacgagttttggacaggtttgatgagtgatttgggcaaagtatgaggacaaatagctgcagcaacaaacaaagca |
39439479 |
T |
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| Q |
215 |
gttgatacgcaacatagatgcaaatgctctctcaagaaattcgctaggtcaatccatttggtagctttggcgaaactgataatcgctttttgaggtccag |
314 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39439480 |
gttgatgcgcaacatagatacaaatgctctctcaagaaattcgctaggtcaatccatttggtagctttggcgaaactgataatcgctttttgaggtccag |
39439579 |
T |
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| Q |
315 |
tgagattcacatcatc |
330 |
Q |
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| T |
39439580 |
tgagattcacatcatc |
39439595 |
T |
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