View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_24 (Length: 310)
Name: NF16508_low_24
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 32590649 - 32590362
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
32590649 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcaca |
32590550 |
T |
|
| Q |
101 |
ttccaacattatacaatgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctatattatgaccaacta |
200 |
Q |
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||| ||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32590549 |
ttctcacattatacgatgtctctttttgcataataattgaatcatgaaagaaaagaaaac--caattattttcttcattttcctatattatgaccaacta |
32590452 |
T |
|
| Q |
201 |
actttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590451 |
actttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaa |
32590362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 32600946 - 32600810
Alignment:
| Q |
156 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc-tccct-aggatgacttctataatagatgtaaacgataaatgggc |
253 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || |||||||| |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggc |
32600847 |
T |
|
| Q |
254 |
atcttatgctggacctggaggatggaatggtaattaa |
290 |
Q |
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| T |
32600846 |
atcttatgctggacctggaggatggaatggtaattaa |
32600810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32601120 - 32601022
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcac |
99 |
Q |
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|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||||||| |
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| T |
32601120 |
aagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgataactcac |
32601022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 24883553 - 24883595
Alignment:
| Q |
244 |
ataaatgggcatcttatgctggacctggaggatggaatggtaa |
286 |
Q |
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| T |
24883553 |
ataaatgggcttcttacgctggacctggaggatggaatggtaa |
24883595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
24 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
78 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 34578242 - 34578122
Alignment:
| Q |
169 |
ttttcttcattttcctatattatgaccaactaactttattcctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacc |
268 |
Q |
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|||||||||||||| ||| || ||| ||||| ||||||||| | || ||||||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
34578242 |
ttttcttcattttc-tatgttgtgatcaactgactttattctacttcagcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacc |
34578144 |
T |
|
| Q |
269 |
tggaggatggaatggtaattaa |
290 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
34578143 |
tggaggatggaatggtaattaa |
34578122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34594168 - 34594091
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
78 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| |
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| T |
34594168 |
aagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 34593992 - 34593912
Alignment:
| Q |
210 |
ctccctaggatgacttctataatagatgtaaacgataaatgggcatcttatgctggacctggaggatggaatggtaattaa |
290 |
Q |
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|||||||| |||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34593992 |
ctccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatggaatggtaattaa |
34593912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34578468 - 34578398
Alignment:
| Q |
1 |
aagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattgg |
71 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |
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| T |
34578468 |
aagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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