View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_28 (Length: 296)
Name: NF16508_low_28
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 45992881 - 45993150
Alignment:
| Q |
14 |
cacagaccacataagcaacaacgagacagaactaatgtacacaaaaaatcaaccactctagtgaacattaaataacttataaaagaactccaagtcatga |
113 |
Q |
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| T |
45992881 |
cacagaccacataagcaacaacgagacagaactagtgtacacaaaaaaccaaccactctagtaaacattaaataacttataaaagaactccaattcatga |
45992980 |
T |
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| Q |
114 |
tcccacacctacaatcttcacacaatgtcatgtcatcatcttcatcatcttcatccggtaaaaaccatggacctttcttcactctccatccctcgcatgt |
213 |
Q |
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| T |
45992981 |
tcccac--ctacaatcttcacacaatgtcatgtcat---------catcttcatccggtaaaaaccatggacctttcttcactctccatccctcgcatgt |
45993069 |
T |
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| Q |
214 |
gctcttcgagttgcatagagcaatttgattgcgcattaacatcccattatttttccacatatcttttgttaaatatttaac |
294 |
Q |
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| T |
45993070 |
gctcttcgagttgcatagagcaatttgattgcgcattaacatcccattatttttccacatatcttttgttaaatatttaac |
45993150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 35454406 - 35454462
Alignment:
| Q |
176 |
aaccatggacctttcttcactctccatccctcgcatgtgctcttcgagttgcataga |
232 |
Q |
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| T |
35454406 |
aaccatcgacctttcttcactctccatcccttgcatgtgctcttggagttgcataga |
35454462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 35454318 - 35454384
Alignment:
| Q |
71 |
ctagtgaacattaaataacttataaaagaactccaagtcatgatcccacacctacaatcttcacacaat |
139 |
Q |
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| T |
35454318 |
ctagtgaacattaaacaacttataaaagaacattaactcatgatcc--aatctacaatcttcacacaat |
35454384 |
T |
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