View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_29 (Length: 296)
Name: NF16508_low_29
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 31385512 - 31385227
Alignment:
| Q |
1 |
tactagtaccacaagccatttcttttcatttgcattgttatcatcaaacgagtttcggtcnnnnnnnnnnnnnnnnnnnnttgtatttatatacaattga |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
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| T |
31385512 |
tactagtaccacatgccatttcttttcatttgcattgttatcatcaaacgagtttaggttaaaaaaataatcaaaagaagttgtagttatatacaattga |
31385413 |
T |
|
| Q |
101 |
actctattgaaacataacaagtcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaagaactcaaacaagaacatctc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
31385412 |
actctattgaaacataacaaatcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaatacaagaactcaaacaagagcatctc |
31385313 |
T |
|
| Q |
201 |
ttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccggttcat |
286 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
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| T |
31385312 |
ttttcacaccgttcatagctataattctcccagttattatagcctcagcggttctctaccggctcgacccattggaaccggttcat |
31385227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 31370812 - 31370610
Alignment:
| Q |
81 |
ttgtatttatatacaattgaactctattgaaacataacaagtcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaag |
180 |
Q |
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||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31370812 |
ttgtagttatatacacttcaactctattgaaacataacaaatcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaatacaag |
31370713 |
T |
|
| Q |
181 |
aactcaaacaagaacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccg |
280 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || || ||||||| || || |||||| |
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| T |
31370712 |
aactcaaccaagaacatctcttttcacaccgttcatagctattattctcccagttattatagcctcggcggttttcaaccggctcgaccctttcgaaccg |
31370613 |
T |
|
| Q |
281 |
gtt |
283 |
Q |
| |
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||| |
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| T |
31370612 |
gtt |
31370610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 81 - 283
Target Start/End: Complemental strand, 31405945 - 31405743
Alignment:
| Q |
81 |
ttgtatttatatacaattgaactctattgaaacataacaag-tcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaa |
179 |
Q |
| |
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||||| ||||||| |||| ||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||||| ||||||||||| |||||| |
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| T |
31405945 |
ttgtagttatatagaattcaactctattgaaacataacaaaatctcctccaccactaaaccttac-agttccaagatgtcggagtcaaacacagacacaa |
31405847 |
T |
|
| Q |
180 |
gaactcaaacaagaacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaacc |
279 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||| || || ||||| |
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| T |
31405846 |
gaactcaaacaagaacatctcttttcacaccgttcatagctattattctcccagttattatagcctcagcggttttctaccggctcgaccctttcgaacc |
31405747 |
T |
|
| Q |
280 |
ggtt |
283 |
Q |
| |
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|||| |
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|
| T |
31405746 |
ggtt |
31405743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31370882 - 31370837
Alignment:
| Q |
1 |
tactagtaccacaagccatttcttttcatttgcattgttatcatca |
46 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31370882 |
tacttgtaccacatgccatttcttttcatttgcattgttatcatca |
31370837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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