View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_32 (Length: 287)
Name: NF16508_low_32
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 47035651 - 47035913
Alignment:
| Q |
8 |
gacatcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
107 |
Q |
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| T |
47035651 |
gacagcatcaatgttttcaaattcctttatttgagatgagttgacatactaccgagaaaaacacattatttcacccgaggagcatgaaggcgagtgaaac |
47035750 |
T |
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| Q |
108 |
cttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
207 |
Q |
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| T |
47035751 |
cttcaacacaaacctccttattcttccattgccacaaaaagtgacaagctatggtacattcaccagaccacaaaattcacatattaatctcattgcgttt |
47035850 |
T |
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| Q |
208 |
gcttaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttcc |
270 |
Q |
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| T |
47035851 |
gctcaaacataactctaaccaatccttaaaatcacatttcaaagaaagcttcacgatctttcc |
47035913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 36571801 - 36571711
Alignment:
| Q |
89 |
gcatgaaggcgagtgaaaccttcaacacgaacctccttattcttccattgccacaaaaagtgacaagctatagtacattcaccagaccaca |
179 |
Q |
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| T |
36571801 |
gcatgaggacgagtgaaaccttcaacatgaaccttcttattctttcattgttgcaatgagtgacaagttatagcccatacaccagaccaca |
36571711 |
T |
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