View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16508_low_33 (Length: 287)
Name: NF16508_low_33
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 32077382 - 32077144
Alignment:
| Q |
28 |
agatgaagattgaaactttgaatcttgatattcttattctttcccaaaattgctatggaagccctaccaacttccctctgccacatggtggccatgccat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32077382 |
agatgaagattgaaactttgaatcttgatattcttattctttcccaaaattgctatggaagccctaccaacttccctctgccacatggtggccatgccat |
32077283 |
T |
|
| Q |
128 |
ttcctgtacgaggcaatatcaaccctatgatgaacctctgcaaactccttgtctccaacaatatcaacattcatgtttcctttgtagtcactgaagaatg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32077282 |
ttcctgtacgaggcaatatcaaccctatgatgaacctctgcaaactccttgtctccaacaatagcaacattcatgtttcctttgtagtcactgaagaatg |
32077183 |
T |
|
| Q |
228 |
gctaagcttcatctcctccgagccaaaacccgacaacat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32077182 |
gctaagcttcatctcctccgagccaaaacctgacaacat |
32077144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 266
Target Start/End: Original strand, 31004363 - 31004560
Alignment:
| Q |
69 |
tcccaaaattgctatggaagccctaccaacttccctctgccacatggtggccatgccatttcctgtacgaggcaatatcaaccctatgatgaacctctgc |
168 |
Q |
| |
|
|||||||||||| |||||| | | |||||||| | || |||||| | |||||||| | |||| | ||||| | |||||||| ||||||||||| ||| |
|
|
| T |
31004363 |
tcccaaaattgcaatggaatcaccaccaactttcttcaaccacatactagccatgccttcccctgcaagaggccacatcaacccaatgatgaacctatgc |
31004462 |
T |
|
| Q |
169 |
aaactccttgtctccaacaatatcaacattcatgtttcctttgtagtcactgaagaatggctaagcttcatctcctccgagccaaaacccgacaacat |
266 |
Q |
| |
|
|| |||||| ||||||| || | |||||| | |||| | ||| | ||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
31004463 |
aagctccttatctccaagaacaacaacatccttgttacatttattgtcaccgaagaatggttaaccttcatctcctccgaaccaaaacccgacaacat |
31004560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 31009453 - 31009547
Alignment:
| Q |
136 |
cgaggcaatatcaaccctatgatgaacctctgcaaactccttgtctccaacaatatcaacattcatgtttcctttgtagtcactgaagaatggct |
230 |
Q |
| |
|
|||||| | |||||||| ||||||||||| ||||||||||| |||||||||| |||||| |||| ||||||| ||||| ||||||||||| |
|
|
| T |
31009453 |
cgaggccacatcaacccaatgatgaacctatgcaaactcctcatctccaacaaccccaacatcgttgttacctttgttgtcacagaagaatggct |
31009547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University