View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_low_34 (Length: 275)

Name: NF16508_low_34
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_low_34
NF16508_low_34
[»] chr2 (28 HSPs)
chr2 (1-275)||(39473800-39474075)
chr2 (32-275)||(39390452-39390695)
chr2 (81-251)||(39458731-39458901)
chr2 (81-253)||(39222322-39222494)
chr2 (82-253)||(39390264-39390435)
chr2 (1-183)||(39152172-39152354)
chr2 (5-125)||(39136559-39136679)
chr2 (99-251)||(39603191-39603343)
chr2 (105-272)||(39458587-39458754)
chr2 (1-126)||(39416042-39416167)
chr2 (83-178)||(39415738-39415833)
chr2 (1-88)||(39458525-39458612)
chr2 (25-119)||(39415161-39415255)
chr2 (38-216)||(39451680-39451858)
chr2 (75-155)||(39136881-39136961)
chr2 (28-108)||(39422180-39422260)
chr2 (81-216)||(39192554-39192689)
chr2 (81-216)||(39198234-39198369)
chr2 (114-249)||(39602996-39603131)
chr2 (40-178)||(39415486-39415624)
chr2 (81-178)||(39390129-39390226)
chr2 (5-141)||(38792379-38792517)
chr2 (99-178)||(39222550-39222629)
chr2 (81-141)||(38792578-38792638)
chr2 (14-158)||(38792649-38792793)
chr2 (44-188)||(39389699-39389843)
chr2 (43-150)||(39221654-39221761)
chr2 (36-125)||(39398054-39398143)
[»] chr7 (2 HSPs)
chr7 (5-127)||(19806920-19807042)
chr7 (75-272)||(19807242-19807439)
[»] chr5 (1 HSPs)
chr5 (25-253)||(17059169-17059397)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 39474075 - 39473800
Alignment:
Q  1 atttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39474075 atttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagctt 39473976  T
Q  101 gatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggagg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473975 gatggccgagtggaggagcataaatcaaaacagagagaatttgaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggagg 39473876  T
Q  201 atctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaa-gaagcaacttgatgtca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  39473875 atctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgacaaggaagcaacttgatgtca 39473800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 275
Target Start/End: Complemental strand, 39390695 - 39390452
Alignment:
Q  32 gatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaac 131  Q
    |||||| ||||||||||||||||||||||| |||  ||| || || || |||||||||||||||| | |||  |||||||| |||||||||||||||||     
T  39390695 gatttgctatcaaaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaag 39390596  T
Q  132 agagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaagg 231  Q
    |||||||||| ||| ||||  ||||||  || |||||||||| |||| |||| ||||  ||||||||||| |||||| ||||||| || |||||||||||    
T  39390595 agagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaaacagaagagaggcaattgaaagg 39390496  T
Q  232 acaagttaaggaacttgagtctgagaagaagcaacttgatgtca 275  Q
    |||||||||||||||||||||| |  |||||||| |||||||||    
T  39390495 acaagttaaggaacttgagtctaaagagaagcaatttgatgtca 39390452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 39458731 - 39458901
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 180  Q
    |||| ||||||||||| ||||||||||||| ||| |  |||||||||||| |||||||||| ||| |||| ||||||| ||| ||||||||||||||       
T  39458731 agtctaaagagaagcaacttgatggccgaggggaagtacatgaatcaaaaaagagagaattcgaaggccatgtgaaggagctcgaatctaaaaagaattg 39458830  T
Q  181 tttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagt 251  Q
    ||| ||||  ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  39458831 ttttgaaagtcaagtggaggagctcaaatcaaaagagagacaattgaaaggacaagttaaggaacttgagt 39458901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 39222322 - 39222494
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 180  Q
    |||| ||||||||||| ||||| |||| |||| |||||||| |||||||| |||||| ||| ||| ||||  ||||||  || ||||| ||||||||| |    
T  39222322 agtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggccaactgaaggaactggaatccaaaaagaagca 39222421  T
Q  181 tttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtct 253  Q
    ||| ||||  |||||||||||  |||||||| |||| || |||||||||||||| ||||||||| ||||||||    
T  39222422 ttttgaaaatcaagtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtct 39222494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 39390435 - 39390264
Alignment:
Q  82 gtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaat 181  Q
    ||||||||||||||| | |||  |||||||| ||||||||| ||||||| |||||||||| ||| ||||  ||||||  || |||||||||| |||| ||    
T  39390435 gtcaaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcat 39390336  T
Q  182 ttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtct 253  Q
    || ||||  ||||||||||| |||||| || |||  |  |||||||||||| ||||||||||||||||||||    
T  39390335 tttgaaagccaagtggaggagctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtct 39390264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 39152172 - 39152354
Alignment:
Q  1 atttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagctt 100  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| ||  || | ||| |||| |||||||| || |||    
T  39152172 atttgaaagccaagtaaaggagctggtgaatgatttggtatccaaacagaagcattttgaaagccggattaaggaacttgagtctaaagagaaacaactt 39152271  T
Q  101 gatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaattt 183  Q
    ||||| |||||| ||| |  |||||||||| ||   ||||| ||| |||||||||||  ||| |||||  |||||||| ||||    
T  39152272 gatggacgagtgaaggggtttgaatcaaaagaggatgaatttgaaggccaggtgaagaagctggaatcagaaaagaagcattt 39152354  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 39136559 - 39136679
Alignment:
Q  5 gaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatg 104  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||  ||  || ||||| |||| ||||||| ||| ||||| |    
T  39136559 gaaagccaagtgaaggagctggtgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaag 39136658  T
Q  105 gccgagtggaggagcatgaat 125  Q
    ||||| || ||||||||||||    
T  39136659 gccgattgaaggagcatgaat 39136679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 251
Target Start/End: Original strand, 39603191 - 39603343
Alignment:
Q  99 ttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtgga 198  Q
    |||| ||||||| | ||||||||||||||||| |||||||||| ||||  || | ||||| ||| ||||||||||||||| |||| ||||  ||||||||    
T  39603191 ttgaaggccgagcgaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtgga 39603290  T
Q  199 ggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagt 251  Q
    |||  ||| |||| ||    | |||||||||||||||||||||||||||||||    
T  39603291 ggagttcacatcaaaactgtggcaattgaaaggacaagttaaggaacttgagt 39603343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 272
Target Start/End: Original strand, 39458587 - 39458754
Alignment:
Q  105 gccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatct 204  Q
    ||||| || |||||| ||| |||||| ||||||| || |||   |||||||||| ||| |||||| ||||||||| ||| ||||  |||||||||||  |    
T  39458587 gccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 39458686  T
Q  205 caaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaagaagcaacttgatg 272  Q
    |  |||| || | || ||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  39458687 cgtatcacaacagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatg 39458754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39416167 - 39416042
Alignment:
Q  1 atttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagctt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| | |||||   || |||||||| || ||||| |||| || |||||||| |||    
T  39416167 atttgaaagccaagtgaaggagctagggaatgatttggtatcagaacacatgcattacaaaagccgcatgaaggagcttgagtctaatgagaagcaactt 39416068  T
Q  101 gatggccgagtggaggagcatgaatc 126  Q
    |  |||| | || |||||||||||||    
T  39416067 ggaggccaattgaaggagcatgaatc 39416042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 39415833 - 39415738
Alignment:
Q  83 tcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 178  Q
    |||||||||||||||| ||| ||||| ||| | ||||||| ||||||| |||||||||| ||| |||||||||||| |||  ||||||||||||||    
T  39415833 tcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtgaaggagctgaaatctaaaaagaag 39415738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39458525 - 39458612
Alignment:
Q  1 atttgaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaa 88  Q
    |||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||| ||| |||| ||| || ||||| ||||||||    
T  39458525 atttgaaatccaggcgaaggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtcaaaa 39458612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 39415255 - 39415161
Alignment:
Q  25 agtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagc 119  Q
    ||||||||||||||||||||||| ||| ||||||||| |||| ||| || ||||| |||||||||||||||| | ||| || |||||| ||||||    
T  39415255 agtgaatgatttggtatcaaaactgaatcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 39451680 - 39451858
Alignment:
Q  38 gtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagag 137  Q
    ||||| |||||||| |||| |||| |||| |||||| | ||| | | ||| |||| ||| | ||| ||||| |||  ||||||||||||||||  |||||    
T  39451680 gtatctaaacagaaacattatgaaagccggatggaggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagag 39451779  T
Q  138 aattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaaga 216  Q
    |||| ||| || | |||||||  || ||||||||||||||| |||| ||||  ||||||||||| ||||||||| ||||    
T  39451780 aatttgaaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaaaaga 39451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 39136881 - 39136961
Alignment:
Q  75 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtga 155  Q
    ||||| |||||||||||||||||| ||| ||||| ||| ||||||||| ||||||| |||||||||| |||||||| ||||    
T  39136881 agcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaagtga 39136961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 39422260 - 39422180
Alignment:
Q  28 gaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccg 108  Q
    ||||||||||||||||||||||||||| |||||| |||| ||| || | ||| |||| ||||||||||| |||||||||||    
T  39422260 gaatgatttggtatcaaaacagaagcaatttgaaagccgaatgaaggaccttgagtctaaagagaagcaacttgatggccg 39422180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 39192689 - 39192554
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 180  Q
    |||||||||||||||| | ||| | || |||| |||||| |||||||||| |||||||||| ||| |||| |||||||  || ||||||| ||||||| |    
T  39192689 agtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagca 39192590  T
Q  181 tttagaaatgcaagtggaggatctcaaatcagaaga 216  Q
    |||  |||  |||||||||||  |||||||| ||||    
T  39192589 ttttaaaagtcaagtggaggagttcaaatcaaaaga 39192554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 39198369 - 39198234
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 180  Q
    |||||||||||||||| | ||| | || |||| |||||| |||||||||| |||||||||| ||| |||| |||||||  || ||||||| ||||||| |    
T  39198369 agtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagca 39198270  T
Q  181 tttagaaatgcaagtggaggatctcaaatcagaaga 216  Q
    |||  |||  |||||||||||  |||||||| ||||    
T  39198269 ttttaaaagtcaagtggaggagttcaaatcaaaaga 39198234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 39602996 - 39603131
Alignment:
Q  114 aggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcaga 213  Q
    ||||||||||||||||| | ||||| || ||| |||| |||| || ||| ||||||||||||||| |||| ||||  || |||||||| |||| |||| |    
T  39602996 aggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaagcattttgaaagccatgtggaggagctcacatcaaa 39603095  T
Q  214 agaaagacaattgaaaggacaagttaaggaacttga 249  Q
         | |||||||||||||| ||||||||||||||    
T  39603096 tctgtggcaattgaaaggacaggttaaggaacttga 39603131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 39415624 - 39415486
Alignment:
Q  40 atcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaa 139  Q
    ||||||||||||||||||  || |  | ||| || ||||| || ||||||||||||| | ||| || | |||| |||||  |||||||||| ||||||||    
T  39415624 atcaaaacagaagcatttcaaaaggagaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaa 39415525  T
Q  140 ttggaaagccaggtgaaggggctagaatctaaaaagaag 178  Q
    ||  ||||||| |||| || ||| |||||||||||||||    
T  39415524 tttaaaagccaagtgagggagctggaatctaaaaagaag 39415486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 39390226 - 39390129
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 178  Q
    |||||||||||||||| | |||  |||||||| ||||||||||||| ||| ||||||| || ||| ||||  ||||||  || |||||||||||||||    
T  39390226 agtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatctaaaaagaag 39390129  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 38792379 - 38792517
Alignment:
Q  5 gaaagccaagtgaaggagctagtgaatgatttg--gtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttga 102  Q
    |||||||||||||||||||| ||||||||||||  || |  | ||| ||||| |||||  || | ||| || | ||| ||| |||||||||||||| |||    
T  38792379 gaaagccaagtgaaggagctggtgaatgatttggtgtgttgagacaaaagcagtttgagagcggaatgaaggaccttgagttaaaagagaagcagcatga 38792478  T
Q  103 tggccgagtggaggagcatgaatcaaaacagagagaatt 141  Q
     || || ||| |||||||||||||||||  |||||||||    
T  38792479 aggtcgggtgaaggagcatgaatcaaaaacgagagaatt 38792517  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 39222550 - 39222629
Alignment:
Q  99 ttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 178  Q
    |||| |||||| || ||||||||||||||||| |||||||||| ||||  || ||||||| |||  ||||||||||||||    
T  39222550 ttgaaggccgaatgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaag 39222629  T

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Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 38792578 - 38792638
Alignment:
Q  81 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaatt 141  Q
    |||| ||||||||||| | ||| ||||  ||||||||||||||||||||| ||||||||||    
T  38792578 agtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatt 38792638  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 38792649 - 38792793
Alignment:
Q  14 gtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtgg 113  Q
    |||| |||||| ||||||||||| ||||  |||||||||| ||| |||  ||| ||| || | ||| |||| ||||| |||||   ||| ||||| |||     
T  38792649 gtgacggagctggtgaatgattttgtattgaaacagaagcttttcgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 38792748  T
Q  114 aggagcatgaatcaaaacagagagaattggaaagccaggtgaagg 158  Q
    ||||||| ||||||||| |||||||||| ||| | || |||||||    
T  38792749 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaagg 38792793  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 39389843 - 39389699
Alignment:
Q  44 aaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattgg 143  Q
    ||||||||||||| | || |||  ||| || ||||| ||||||||| |||||| ||||| | || | || ||||||||||||||||  |||  ||||| |    
T  39389843 aaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcatgaatcaaaggagaaggaatttg 39389744  T
Q  144 aaagccaggtgaaggggctagaatctaaaaagaagaatttagaaa 188  Q
    || | || | ||||| ||| ||||||||||||||| |||| ||||    
T  39389743 aaggtcaagcgaaggagctggaatctaaaaagaagcatttcgaaa 39389699  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 39221654 - 39221761
Alignment:
Q  43 aaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattg 142  Q
    |||||| || ||||||||| |||  ||| || || || |||||||||||||||| | ||| ||| | ||| ||||||||| ||||||| ||||||||||     
T  39221654 aaaacaaaaacattttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaattt 39221753  T
Q  143 gaaagcca 150  Q
    ||| ||||    
T  39221754 gaaggcca 39221761  T

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Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 39398143 - 39398054
Alignment:
Q  36 tggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaat 125  Q
    |||||||||||||||||||| ||| | |||| ||| | || ||| | ||||| |||||||| | ||| | ||||||| ||||||||||||    
T  39398143 tggtatcaaaacagaagcatattgtaagccgaatgaaaaaacttgattcaaatgagaagcaacatgaagcccgagtgaaggagcatgaat 39398054  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 19806920 - 19807042
Alignment:
Q  5 gaaagccaagtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatg 104  Q
    |||||||| |||||||||||  ||||||||||||||||||||||||||||||| ||| |||  ||  || ||||| |||| ||||||| ||| ||||| |    
T  19806920 gaaagccacgtgaaggagctgatgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaag 19807019  T
Q  105 gccgagtggaggagcatgaatca 127  Q
    ||||| || ||||||||||||||    
T  19807020 gccgattgaaggagcatgaatca 19807042  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 19807242 - 19807439
Alignment:
Q  75 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaa 174  Q
    ||||| |||||||||||||||||| ||| |||||  || ||||||||| ||||||| |||||||||| ||||||||  ||| || ||   ||||||||||    
T  19807242 agcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaaagccaaatgatggagcagcaatctaaaaa 19807341  T
Q  175 gaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaagaagcaacttgatg 272  Q
    ||||   || ||||  ||||||||||| || |||||| |||| |||||     ||||||||||||| |||||||||||| |   ||||||||||||||    
T  19807342 gaagctgtttgaaagccaagtggaggagcttaaatcaaaagagagacatactcaaggacaagttaaagaacttgagtctaaagcgaagcaacttgatg 19807439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 17059169 - 17059397
Alignment:
Q  25 agtgaatgatttggtatcaaaacagaagcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaa 124  Q
    |||||| |||||||||||||  || |||||||| ||| |||| ||| || |||||   ||||||||||| || | ||| |  |  |||  ||||||  ||    
T  17059169 agtgaaggatttggtatcaattcataagcatttcgaaagccgaatgaaggagcttgcatcaaaagagaaacaacatgaagcactggtgatggagcacaaa 17059268  T
Q  125 tcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaat 224  Q
    |||||| |||| ||||| ||| |||  ||||||| ||| ||||||||||| ||| |||| || || ||||||||||| ||||||||| |||| || ||||    
T  17059269 tcaaaagagagtgaatttgaaggcctagtgaaggagctggaatctaaaaaaaaggattttgatatccaagtggaggagctcaaatcaaaagagaggcaat 17059368  T
Q  225 tgaaaggacaagttaaggaacttgagtct 253  Q
    || ||||| ||||| |||| |||||||||    
T  17059369 tggaaggagaagttcaggatcttgagtct 17059397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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