View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_35 (Length: 274)
Name: NF16508_low_35
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 10584988 - 10584732
Alignment:
| Q |
18 |
gtagaggtgcctccaaaa--caccaattagagtattaaccaaagttttctttattgtcaacccaatttgttagttgagaaaaagaattaattttcattac |
115 |
Q |
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| T |
10584988 |
gtagaggtggctccaaaaaacaccaattagagtattaaccaaagttttctttactgtcaacccaatttgttagttgagaaaaagaattaattttcattac |
10584889 |
T |
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| Q |
116 |
ggggttcttttgttacatgaggtgggcatatcacctgttcttgttttacatttggagcttcctctgtcgagagaaaggatgagagacaacaaaataaaca |
215 |
Q |
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| T |
10584888 |
ggggttcttttgtaacatgaggtgggcatatcacctgttcttgttttacatttggagcttcctctgtc--gagaaaggatgagagacaacaaaataaaca |
10584791 |
T |
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| Q |
216 |
aacaatttagagagaggtagagaattcacaaatatacaatcaacataaaaaatgcatat |
274 |
Q |
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| T |
10584790 |
aacaatttagagagaggtagagaattcacaaatatacaatcaacataagaaatgcatat |
10584732 |
T |
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