View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_36 (Length: 263)
Name: NF16508_low_36
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_36 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 32590954 - 32590704
Alignment:
| Q |
13 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaattgcaaataggtatatctacatacttaatatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32590954 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaaatgcaaataggtatatctacatacttaatatt |
32590855 |
T |
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| Q |
113 |
ttgtnnnnnnnntagtacttactagtttcatacgttgtgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttct |
212 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32590854 |
ttgtaaaaaaaatagtactcactagtttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttct |
32590755 |
T |
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| Q |
213 |
ctatgtgtgaatggtgagttgaattagagataatgtttctcatacataatt |
263 |
Q |
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| T |
32590754 |
ctgtgtgtgaatggtgagttgaattagtgataatgtttctcatacataatt |
32590704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 32601423 - 32601175
Alignment:
| Q |
13 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaattgcaaataggtatatctacatacttaatatt |
112 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||| |
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| T |
32601423 |
tgaagtatgataattgtgaaaataatggtataagcgttagagaaaggtatttaatttattttcttcaaattaaaataggtatatcaacatacttaatatt |
32601324 |
T |
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| Q |
113 |
ttgtnnnnnnnntagtacttactagtttcatacgttgtgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttct |
212 |
Q |
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| T |
32601323 |
ttgtaaaaaa--tagtacttactagtttcatacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttct |
32601226 |
T |
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| Q |
213 |
ctatgtgtgaatggtgagttgaattagagataatgtttctcatacataatt |
263 |
Q |
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| T |
32601225 |
ctatgtgtgaatggtgagctggattggtgataatgtttctcatacataatt |
32601175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 24883186 - 24883259
Alignment:
| Q |
158 |
aggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagt |
231 |
Q |
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| T |
24883186 |
aggtacccacgaatgggtgaagctttagtacaatctggaaggccaatcttctactctttgtgtgaatggtgagt |
24883259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 35124459 - 35124244
Alignment:
| Q |
13 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaattgcaaataggtatatctacatacttaatatt |
112 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || | |||||||||||||| | || |||||||| || || |
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| T |
35124459 |
tgaagtatgataattgtgaaaataatggtataagcgttagagaaaggtatttaatcaatagtattcaattgcaaataagcat--ctacatac---atgtt |
35124365 |
T |
|
| Q |
113 |
ttgtnnnnnnnntagtacttactagtttcatacgttgtgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttct |
212 |
Q |
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|| | | |||||| |||||||||| || ||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
35124364 |
ttataaaaatc--aatacttattagtttcataaattttgtaaattaggtacccaccaatgagtgaagccttgttaaactctggaagaccaatcttcttct |
35124267 |
T |
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| Q |
213 |
ctatgtgtgaatggtgagttgaa |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
35124266 |
ctatgtgtgaatggtgagttgaa |
35124244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 34578633 - 34578549
Alignment:
| Q |
153 |
aaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttgaatt |
237 |
Q |
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|||| ||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34578633 |
aaattaggtatccaccaatgagtgaagctttattaaactccggaaggccaatcttcttctctatgtgtgaatggtgagttgaatt |
34578549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 34594332 - 34594230
Alignment:
| Q |
158 |
aggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttg-aattagagataatgtttctcata |
256 |
Q |
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|||||||| |||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | || |||||||||||| |
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| T |
34594332 |
aggtacccgccaatgagtgaagccttaatgaaatctggaaggtcaatcttcttctcaatgtgtgaatggtgagttgaaattaaatatgatgtttctcata |
34594233 |
T |
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| Q |
257 |
cat |
259 |
Q |
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||| |
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| T |
34594232 |
cat |
34594230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 34578769 - 34578694
Alignment:
| Q |
13 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaatttatgttcttcaattgcaaat |
88 |
Q |
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||||||||||||||||| | ||||| || ||||||||| | |||||||||||||| |||| ||||| ||||||| |
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| T |
34578769 |
tgaagtatgataattgtgaaaataacggaataagcgttcgcgaaaggtatttaatatatggctttcaaatgcaaat |
34578694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 34594477 - 34594423
Alignment:
| Q |
13 |
tgaagtatgataattgtcacaataatggtataagcgttagagaaaggtatttaat |
67 |
Q |
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||||||||||||||||| | || |||||||||||| || ||||||||||||||| |
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| T |
34594477 |
tgaagtatgataattgtgaaaacaatggtataagccctaaagaaaggtatttaat |
34594423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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