View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16508_low_39 (Length: 257)
Name: NF16508_low_39
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16508_low_39 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11104 - 10864
Alignment:
| Q |
1 |
acctaccctgcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggtt |
100 |
Q |
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| T |
11104 |
acctaccccgcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggtt |
11005 |
T |
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| Q |
101 |
gaaatcatgttcccactttgagaggcacaagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgac |
200 |
Q |
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| T |
11004 |
gaaatcatgttcccactttgagaggcataagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgat |
10905 |
T |
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| Q |
201 |
gagagatcacaagaggttaaagatttgtttcccttattcat |
241 |
Q |
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| T |
10904 |
gagagatcacaagaggttaaagatttgtttcccttattcat |
10864 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 15698022 - 15697967
Alignment:
| Q |
153 |
atcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatc |
208 |
Q |
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| T |
15698022 |
atcaacctccattgtccaaaatccttccaaattgtttgcagcttcgacgagagatc |
15697967 |
T |
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