View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16508_low_43 (Length: 237)

Name: NF16508_low_43
Description: NF16508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16508_low_43
NF16508_low_43
[»] chr2 (3 HSPs)
chr2 (14-219)||(39090843-39091047)
chr2 (58-103)||(39068709-39068754)
chr2 (46-111)||(44488003-44488068)
[»] chr3 (2 HSPs)
chr3 (59-101)||(47039443-47039485)
chr3 (62-103)||(52119395-52119436)
[»] chr1 (4 HSPs)
chr1 (58-103)||(19262908-19262953)
chr1 (58-101)||(5031157-5031200)
chr1 (62-101)||(12500942-12500981)
chr1 (58-103)||(26329123-26329168)
[»] chr5 (4 HSPs)
chr5 (53-101)||(16752505-16752553)
chr5 (63-101)||(29554882-29554920)
chr5 (62-103)||(22901978-22902019)
chr5 (65-101)||(6237722-6237758)
[»] chr7 (3 HSPs)
chr7 (58-101)||(42336085-42336128)
chr7 (58-103)||(39926539-39926584)
chr7 (58-103)||(45200208-45200253)
[»] chr8 (6 HSPs)
chr8 (62-103)||(9635054-9635095)
chr8 (62-103)||(20275190-20275231)
chr8 (62-103)||(21061817-21061858)
chr8 (54-103)||(23159452-23159501)
chr8 (54-86)||(33763826-33763858)
chr8 (66-98)||(35700401-35700433)
[»] chr4 (2 HSPs)
chr4 (54-86)||(29910472-29910504)
chr4 (54-86)||(49952689-49952721)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 39090843 - 39091047
Alignment:
Q  14 ttctactttctgcacctaagaatgtgaatgatagtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccacnn 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||||||      
T  39090843 ttctactttctacacctaagaatgtgaatgatagtttacttcaattgataaagacaatgcataatatatgcaaagttcgggattcgaaccccatccacaa 39090942  T
Q  114 nnnnnncatgttaatgatcaattatacaaaatgagaataacattattttgaacaaactcaaaggttagacggtaaatatggaaagaatacttcctcaaat 213  Q
          |||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39090943 aaaaa-catgttaatgatcaattatgaaaaacgagaataacattattttgaacaaactcaaaggttagacagtaaatatggaaagaatacttcctcaaat 39091041  T
Q  214 gatcat 219  Q
    ||||||    
T  39091042 gatcat 39091047  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 39068754 - 39068709
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||||||| |||||| || ||||||| |||||    
T  39068754 ttgataaggacaatgcataatatatgcaagatccggggtttgaacc 39068709  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 44488068 - 44488003
Alignment:
Q  46 agtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccac 111  Q
    |||||| |||| ||| |||||||||||||||||| ||| ||  ||||| |||| ||||||||||||    
T  44488068 agtttagttcagttggtaaggacaatgcataatatatgtaaggttcggagttcaaaccacatccac 44488003  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 47039443 - 47039485
Alignment:
Q  59 tgataaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  47039443 tgataaggacaatgcataatatatgcaaagttcggggttcgaa 47039485  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 52119395 - 52119436
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||| ||||||  |||||||||||||||    
T  52119395 taaggacaatgcataatatatgcaaggttcggggttcgaacc 52119436  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 19262953 - 19262908
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||    
T  19262953 ttgataaggacaatgcataacatatgcaaagttcggggttcgaacc 19262908  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 5031200 - 5031157
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    |||||||||||||||||||||| || |||| |||||||||||||    
T  5031200 ttgataaggacaatgcataatatatacaaagttcggggttcgaa 5031157  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 12500942 - 12500981
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  12500942 taaggacaatgcataatatatgcaaagttcggggttcgaa 12500981  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 26329168 - 26329123
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||| ||||||||||||||||||||  ||||| |||||||||    
T  26329168 ttgataagaacaatgcataatacatgcaaggttcggagttcgaacc 26329123  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 16752553 - 16752505
Alignment:
Q  53 ttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||||    
T  16752553 ttcagttggtaaggacaatgcataatatatgcaagattcggggttcgaa 16752505  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 29554882 - 29554920
Alignment:
Q  63 aaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  29554882 aaggacaatgcataatacatgcaaggttcggggttcgaa 29554920  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 22901978 - 22902019
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||| ||||||| |||||| ||||||||    
T  22901978 taaggacaatgcataatatatgcaaagttcgggattcgaacc 22902019  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 6237758 - 6237722
Alignment:
Q  65 ggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  6237758 ggacaatgcataatatatgcaagattcggggttcgaa 6237722  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 42336085 - 42336128
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 101  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  42336085 ttgataaggacaatgcataatacatgcaaggtccggggttcgaa 42336128  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 39926584 - 39926539
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||||||| ||||||  |||||||||| ||||    
T  39926584 ttgataaggacaatgcataatatatgcaatgttcggggttcaaacc 39926539  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 45200208 - 45200253
Alignment:
Q  58 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||| |||||||||||||||||||||||||  || |||||||||    
T  45200208 ttgatatggacaatgcataatacatgcaaaatctggagttcgaacc 45200253  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 9635095 - 9635054
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  9635095 taaggataatgcataatacatgcaaggttcggggttcgaacc 9635054  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 20275231 - 20275190
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  20275231 taaggacaatgcataatacatgcaaggttcggggttcaaacc 20275190  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 21061858 - 21061817
Alignment:
Q  62 taaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  21061858 taaggacaatgcataatacatgcaaggttcggggttcaaacc 21061817  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 23159452 - 23159501
Alignment:
Q  54 tcaattgataaggacaatgcataatacatgcaaaattcggggttcgaacc 103  Q
    |||||| ||| ||||||||||||||| |||||| ||||||||||| ||||    
T  23159452 tcaattcatatggacaatgcataatatatgcaagattcggggttcaaacc 23159501  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 33763826 - 33763858
Alignment:
Q  54 tcaattgataaggacaatgcataatacatgcaa 86  Q
    |||||||||||||||||||||||||| ||||||    
T  33763826 tcaattgataaggacaatgcataatatatgcaa 33763858  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 35700433 - 35700401
Alignment:
Q  66 gacaatgcataatacatgcaaaattcggggttc 98  Q
    |||||||||||||| ||||||||||||||||||    
T  35700433 gacaatgcataatatatgcaaaattcggggttc 35700401  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 29910472 - 29910504
Alignment:
Q  54 tcaattgataaggacaatgcataatacatgcaa 86  Q
    |||||||||||||||||||||||||| ||||||    
T  29910472 tcaattgataaggacaatgcataatatatgcaa 29910504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 49952721 - 49952689
Alignment:
Q  54 tcaattgataaggacaatgcataatacatgcaa 86  Q
    |||||||||||||||||||||||||| ||||||    
T  49952721 tcaattgataaggacaatgcataatatatgcaa 49952689  T

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